RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ADAM20O43506 726 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 MPLP40238 635 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 VSIG4Q9Y279 399 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 PTPRQQ9UMZ3 2332 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 NPIPB6E9PJ23 425 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 J3KTA2 159 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 ALOX12BO75342 701 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 SMIM13P0DJ93 91 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 DTD1Q8TEA8 209 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 LINC00052Q96N35 136 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 TBX15Q96SF7 602 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 IGFBP4P22692 258 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 OR1D5P58170 312 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 UBE2L3P68036 154 aaKnown RBP6.39□□□□□ -1.39
VPS53-204ENST00000437048 MYBPHQ13203 477 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 RARRES2Q99969 163 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 SCN7AQ01118 1682 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 A0A1W2PQD3 144 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 GYPAP02724 150 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 KISS1Q15726 138 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 ZNF600Q6ZNG1 722 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 C10orf126Q8N4M7 172 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 POC1AQ8NBT0 407 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 OR4X2Q8NGF9 303 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 BAHD1Q8TBE0 780 aaPredicted RBP6.39□□□□□ -1.39
VPS53-204ENST00000437048 GUCD1Q96NT3 240 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 CES1P1Q9UKY3 287 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 YLPM1P49750 1951 aaKnown RBP6.39□□□□□ -1.39
VPS53-204ENST00000437048 A0A0A6YYC8 382 aaPredicted RBP6.39□□□□□ -1.39
VPS53-204ENST00000437048 A0A0U1RQV5 110 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 I3L1I5 382 aaPredicted RBP6.39□□□□□ -1.39
VPS53-204ENST00000437048 TNFSF11O14788 317 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 TRA2AQ13595 282 aaKnown RBP eCLIP6.39□□□□□ -1.39
VPS53-204ENST00000437048 MICBQ29980 383 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 TMEM99Q8N816 258 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 SRD5A3Q9H8P0 318 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 ZNF835Q9Y2P0 537 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 ATP5LO75964 103 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 DNAL4O96015 105 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 IGLV3-27P01718 113 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 COL8A1P27658 744 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 OR6X1Q8NH79 312 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 SLCO1C1Q9NYB5 712 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 KLK11Q9UBX7 282 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 SERGEFQ9UGK8 458 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 OOEPA6NGQ2 149 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 H0Y980 276 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 TNFSF15O95150 251 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 GJB5O95377 273 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 HIKESHIQ53FT3 197 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 SMIM14Q96QK8 99 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 C5AR2Q9P296 337 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 PPIL1Q9Y3C6 166 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 A8MXK9 166 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 EPPINO95925 133 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 ZNF141Q15928 474 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 COX20Q5RI15 118 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 NPDC1Q9NQX5 325 aaPredicted RBP6.39□□□□□ -1.39
VPS53-204ENST00000437048 OR2A4O95047 310 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 PRSS56P0CW18 603 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 FADS6Q8N9I5 356 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 FAM181AQ8N9Y4 354 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 OR2A7Q96R45 310 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 MED20Q9H944 212 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 SIGLEC1Q9BZZ2 1709 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 NHSQ6T4R5 1651 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 LINC00869P0C866 280 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 SIPA1L3O60292 1781 aaPredicted RBP6.39□□□□□ -1.39
VPS53-204ENST00000437048 QSER1Q2KHR3 1735 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 GCM2O75603 506 aaPredicted RBP6.39□□□□□ -1.39
VPS53-204ENST00000437048 GABRG2P18507 467 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 RELQ04864 619 aaPredicted RBP6.39□□□□□ -1.39
VPS53-204ENST00000437048 SQSTM1Q13501 440 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 RAB32Q13637 225 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 EXOSC7Q15024 291 aaKnown RBP6.39□□□□□ -1.39
VPS53-204ENST00000437048 SGMS2Q8NHU3 365 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 IL23AQ9NPF7 189 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 CCDC144NLQ6NUI1 221 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 Q6ZSR6 202 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 HOGA1Q86XE5 327 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 BOD1L2Q8IYS8 172 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 VN1R2Q8NFZ6 395 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 TMEM230Q96A57 120 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 PPP1R3EQ9H7J1 279 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 HSPB7Q9UBY9 170 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 KIAA1551Q9HCM1 1747 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 TRGC2P03986 189 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 RGRP47804 291 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 GPRIN1Q7Z2K8 1008 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 SMPXQ9UHP9 88 aa6.39□□□□□ -1.39
VPS53-204ENST00000437048 COA3Q9Y2R0 106 aaPredicted RBP6.39□□□□□ -1.39
VPS53-204ENST00000437048 LDB3O75112 727 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 SCRG1O75711 98 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 C1SP09871 688 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 NCMAPQ5T1S8 102 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 CD200R1LQ6Q8B3 271 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 ZMIZ1Q9ULJ6 1067 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 MTCH2Q9Y6C9 303 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 KBTBD11-OT1A0A1B0GTJ5 212 aa6.38□□□□□ -1.39
VPS53-204ENST00000437048 RBFOX2O43251 390 aaKnown RBP eCLIP6.38□□□□□ -1.398e-7■■□□□ 13.4
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms