RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 GSX1Q9H4S2 264 aaPredicted RBP13.54□□□□□ -0.24
PTPRF-206ENST00000429895 PAFAH1B2P68402 229 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 MS4A10Q96PG2 267 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 PRO1933Q9H354 126 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 ZNF207O43670 478 aaKnown RBP13.53□□□□□ -0.24
PTPRF-206ENST00000429895 P01737 135 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 COX6B1P14854 86 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 CEBPEQ15744 281 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 ATP6V1FQ16864 119 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 RNF212Q495C1 297 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 DTD1Q8TEA8 209 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 SMIM12Q96EX1 92 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 ZNF426Q9BUY5 554 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 SLC52A3Q9NQ40 469 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 CHST1O43916 411 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 TBX19O60806 448 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 IQCJQ1A5X6 159 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 C10orf113Q5VZT2 155 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 CARFQ8N187 725 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 NPAS1Q99742 590 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 INHBBP09529 407 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 HLA-GP17693 338 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 PPOXP50336 477 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 LOXL3P58215 753 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 MDP1Q86V88 176 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 OR8D4Q8NGM9 314 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 OR10C1Q96KK4 312 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 SF3B5Q9BWJ5 86 aaKnown RBP13.53□□□□□ -0.24
PTPRF-206ENST00000429895 SLC35B3Q9H1N7 401 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 FLRT3Q9NZU0 649 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 SSX1Q16384 188 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 GUCA2BQ16661 112 aa13.53□□□□□ -0.24
PTPRF-206ENST00000429895 MRPS18BQ9Y676 258 aaKnown RBP13.53□□□□□ -0.24
PTPRF-206ENST00000429895 TMEM167BQ9NRX6 74 aa13.52□□□□□ -0.24
PTPRF-206ENST00000429895 TTC3P53804 2025 aa13.52□□□□□ -0.24
PTPRF-206ENST00000429895 MFNGO00587 321 aa13.52□□□□□ -0.24
PTPRF-206ENST00000429895 CIDEAO60543 219 aa13.52□□□□□ -0.24
PTPRF-206ENST00000429895 TMEM33P57088 247 aa13.52□□□□□ -0.24
PTPRF-206ENST00000429895 MRM1Q6IN84 353 aaKnown RBP13.52□□□□□ -0.24
PTPRF-206ENST00000429895 SEZ6L2Q6UXD5 910 aa13.52□□□□□ -0.24
PTPRF-206ENST00000429895 D2HGDHQ8N465 521 aa13.52□□□□□ -0.24
PTPRF-206ENST00000429895 MS4A5Q9H3V2 200 aa13.52□□□□□ -0.24
PTPRF-206ENST00000429895 SLC25A10Q9UBX3 287 aaPredicted RBP13.52□□□□□ -0.24
PTPRF-206ENST00000429895 HILPDAQ9Y5L2 63 aa13.52□□□□□ -0.24
PTPRF-206ENST00000429895 SYNGR2O43760 224 aa13.52□□□□□ -0.25
PTPRF-206ENST00000429895 CEBPDP49716 269 aaPredicted RBP13.52□□□□□ -0.25
PTPRF-206ENST00000429895 ZNF841Q6ZN19 808 aa13.52□□□□□ -0.25
PTPRF-206ENST00000429895 FAM219AQ8IW50 185 aa13.52□□□□□ -0.25
PTPRF-206ENST00000429895 OR1K1Q8NGR3 316 aa13.52□□□□□ -0.25
PTPRF-206ENST00000429895 IGHV3OR16-12A0A075B7B8 117 aa13.52□□□□□ -0.25
PTPRF-206ENST00000429895 MELTFP08582 738 aa13.52□□□□□ -0.25
PTPRF-206ENST00000429895 COL8A1P27658 744 aa13.52□□□□□ -0.25
PTPRF-206ENST00000429895 DCAF10Q5QP82 559 aa13.52□□□□□ -0.25
PTPRF-206ENST00000429895 CLRN3Q8NCR9 226 aa13.52□□□□□ -0.25
PTPRF-206ENST00000429895 ANKRD55Q3KP44 614 aa13.52□□□□□ -0.25
PTPRF-206ENST00000429895 UQCC3Q6UW78 93 aa13.52□□□□□ -0.25
PTPRF-206ENST00000429895 ADAMTS17Q8TE56 1095 aa13.52□□□□□ -0.25
PTPRF-206ENST00000429895 GPR6P46095 362 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-206ENST00000429895 COL10A1Q03692 680 aa13.51□□□□□ -0.25
PTPRF-206ENST00000429895 PRSS54Q6PEW0 395 aa13.51□□□□□ -0.25
PTPRF-206ENST00000429895 FAM210BQ96KR6 192 aa13.51□□□□□ -0.25
PTPRF-206ENST00000429895 LPAR5Q9H1C0 372 aa13.51□□□□□ -0.25
PTPRF-206ENST00000429895 FRRS1LQ9P0K9 344 aa13.51□□□□□ -0.25
PTPRF-206ENST00000429895 C11orf94C9JXX5 98 aa13.51□□□□□ -0.25
PTPRF-206ENST00000429895 TCTAP57738 103 aa13.51□□□□□ -0.25
PTPRF-206ENST00000429895 HSD17B13Q7Z5P4 300 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-206ENST00000429895 ZNF764Q96H86 408 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-206ENST00000429895 SEC11CQ9BY50 192 aa13.51□□□□□ -0.25
PTPRF-206ENST00000429895 TTTY12Q9BZ98 90 aa13.51□□□□□ -0.25
PTPRF-206ENST00000429895 OPN3Q9H1Y3 402 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-206ENST00000429895 ANXA10Q9UJ72 324 aa13.51□□□□□ -0.25
PTPRF-206ENST00000429895 ADRA2AP08913 450 aa13.51□□□□□ -0.25
PTPRF-206ENST00000429895 OR1L6Q8NGR2 347 aa13.51□□□□□ -0.25
PTPRF-206ENST00000429895 WDR34Q96EX3 536 aa13.51□□□□□ -0.25
PTPRF-206ENST00000429895 PRDM14Q9GZV8 571 aa13.51□□□□□ -0.25
PTPRF-206ENST00000429895 CA10Q9NS85 328 aa13.51□□□□□ -0.25
PTPRF-206ENST00000429895 SNRPCP09234 159 aaKnown RBP13.51□□□□□ -0.25
PTPRF-206ENST00000429895 CCL8P80075 99 aa13.51□□□□□ -0.25
PTPRF-206ENST00000429895 ATG4DQ86TL0 474 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-206ENST00000429895 LOC102724200A0A096LPH7 203 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-206ENST00000429895 CDRT15L2A8MXV6 281 aa13.51□□□□□ -0.25
PTPRF-206ENST00000429895 SPINT1O43278 529 aa13.51□□□□□ -0.25
PTPRF-206ENST00000429895 FGF9P31371 208 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-206ENST00000429895 ID1P41134 155 aa13.51□□□□□ -0.25
PTPRF-206ENST00000429895 HERVK_113P61574 105 aa13.51□□□□□ -0.25
PTPRF-206ENST00000429895 C1orf185Q5T7R7 199 aa13.51□□□□□ -0.25
PTPRF-206ENST00000429895 MRPL54Q6P161 138 aaKnown RBP13.51□□□□□ -0.25
PTPRF-206ENST00000429895 MRGPRFQ96AM1 343 aa13.51□□□□□ -0.25
PTPRF-206ENST00000429895 IL24Q13007 206 aa13.5□□□□□ -0.25
PTPRF-206ENST00000429895 Q6ZN92 141 aa13.5□□□□□ -0.25
PTPRF-206ENST00000429895 PRSS42Q7Z5A4 293 aa13.5□□□□□ -0.25
PTPRF-206ENST00000429895 ZNF488Q96MN9 340 aa13.5□□□□□ -0.25
PTPRF-206ENST00000429895 CES1P1Q9UKY3 287 aa13.5□□□□□ -0.25
PTPRF-206ENST00000429895 HAX1O00165 279 aa13.5□□□□□ -0.25
PTPRF-206ENST00000429895 CTSDP07339 412 aaPredicted RBP13.5□□□□□ -0.25
PTPRF-206ENST00000429895 FAM157CP0CG43 387 aa13.5□□□□□ -0.25
PTPRF-206ENST00000429895 ZP3P21754 424 aa13.5□□□□□ -0.25
PTPRF-206ENST00000429895 PSG6Q00889 435 aa13.5□□□□□ -0.25
PTPRF-206ENST00000429895 TMEM183BQ1AE95 376 aa13.5□□□□□ -0.25
PTPRF-206ENST00000429895 PARP11Q9NR21 331 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 136.3 ms