RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ACTG1P63261 375 aa8.42□□□□□ -1.06
CD44-207ENST00000425428 HACD4Q5VWC8 232 aa8.42□□□□□ -1.06
CD44-207ENST00000425428 SLC35E4Q6ICL7 350 aa8.42□□□□□ -1.06
CD44-207ENST00000425428 BTNL3Q6UXE8 466 aa8.42□□□□□ -1.06
CD44-207ENST00000425428 FAM216BQ8N7L0 139 aa8.42□□□□□ -1.06
CD44-207ENST00000425428 Q96MF0 132 aa8.42□□□□□ -1.06
CD44-207ENST00000425428 SCPEP1Q9HB40 452 aa8.42□□□□□ -1.06
CD44-207ENST00000425428 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.42□□□□□ -1.06
CD44-207ENST00000425428 ZNF222Q9UK12 451 aa8.42□□□□□ -1.06
CD44-207ENST00000425428 YLPM1P49750 1951 aaKnown RBP8.41□□□□□ -1.06
CD44-207ENST00000425428 IGHV4-30-2A0A087WSY4 118 aa8.41□□□□□ -1.06
CD44-207ENST00000425428 RBBP9O75884 186 aa8.41□□□□□ -1.06
CD44-207ENST00000425428 IGHV2-5P01817 119 aa8.41□□□□□ -1.06
CD44-207ENST00000425428 LIPFP07098 398 aa8.41□□□□□ -1.06
CD44-207ENST00000425428 GSTT2BP0CG30 244 aa8.41□□□□□ -1.06
CD44-207ENST00000425428 GZMHP20718 246 aa8.41□□□□□ -1.06
CD44-207ENST00000425428 RPL31P62899 125 aaKnown RBP8.41□□□□□ -1.06
CD44-207ENST00000425428 MEF2CQ06413 473 aaPredicted RBP8.41□□□□□ -1.06
CD44-207ENST00000425428 ZNF846Q147U1 533 aa8.41□□□□□ -1.06
CD44-207ENST00000425428 BRICD5Q6PL45 260 aa8.41□□□□□ -1.06
CD44-207ENST00000425428 LYPD2Q6UXB3 125 aa8.41□□□□□ -1.06
CD44-207ENST00000425428 IZUMO1Q8IYV9 350 aa8.41□□□□□ -1.06
CD44-207ENST00000425428 FAM185AQ8N0U4 392 aa8.41□□□□□ -1.06
CD44-207ENST00000425428 CLDND2Q8NHS1 167 aa8.41□□□□□ -1.06
CD44-207ENST00000425428 REG4Q9BYZ8 158 aa8.41□□□□□ -1.06
CD44-207ENST00000425428 GAL3ST2Q9H3Q3 398 aa8.41□□□□□ -1.06
CD44-207ENST00000425428 AUNIPQ9H7T9 357 aa8.41□□□□□ -1.06
CD44-207ENST00000425428 ZMAT3Q9HA38 289 aaKnown RBP8.41□□□□□ -1.06
CD44-207ENST00000425428 MAB21L2Q9Y586 359 aa8.41□□□□□ -1.06
CD44-207ENST00000425428 KIAA2026Q5HYC2 2103 aa8.41□□□□□ -1.06
CD44-207ENST00000425428 BAHCC1Q9P281 2608 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 LOC105371242A0A075B767 164 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 A0A0A6YYD4 124 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 KIR2DS1A0A191URI9 304 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 TMEM235A6NFC5 223 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 VWC2LB2RUY7 222 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 SPINT2O43291 252 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 PSPNO60542 156 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 LPLP06858 475 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 KIR2DS4P43632 304 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 OR3A1P47881 315 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 P2RX3P56373 397 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 TMEM50BP56557 158 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 AP3S2P59780 193 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 AESQ08117 197 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 PLA2G7Q13093 441 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 KIR2DS1Q14954 304 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 MOGAT2Q3SYC2 334 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 ZNF260Q3ZCT1 412 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 TRIQKQ629K1 86 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 WDR25Q64LD2 544 aaPredicted RBP8.4□□□□□ -1.06
CD44-207ENST00000425428 GDPD1Q8N9F7 314 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 DTX3Q8N9I9 347 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 OR4S1Q8NGB4 309 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 SULT4A1Q9BR01 284 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 MIXL1Q9H2W2 232 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 NCOR1P1Q9H4R4 102 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 ZNF286AQ9HBT8 521 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 TAS2R8Q9NYW2 309 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 AK3Q9UIJ7 227 aa8.4□□□□□ -1.06
CD44-207ENST00000425428 TMEM82A0PJX8 343 aa8.4□□□□□ -1.07
CD44-207ENST00000425428 ODAMA1E959 279 aa8.4□□□□□ -1.07
CD44-207ENST00000425428 B4DSR2 109 aa8.4□□□□□ -1.07
CD44-207ENST00000425428 GABARAPH6UMI1 98 aa8.4□□□□□ -1.07
CD44-207ENST00000425428 MFNGO00587 321 aa8.4□□□□□ -1.07
CD44-207ENST00000425428 ENSAO43768 121 aaKnown RBP8.4□□□□□ -1.07
CD44-207ENST00000425428 ZNF737O75373 536 aa8.4□□□□□ -1.07
CD44-207ENST00000425428 DTYMKP23919 212 aa8.4□□□□□ -1.07
CD44-207ENST00000425428 ETV6P41212 452 aa8.4□□□□□ -1.07
CD44-207ENST00000425428 GLP1RP43220 463 aa8.4□□□□□ -1.07
CD44-207ENST00000425428 GZMKP49863 264 aa8.4□□□□□ -1.07
CD44-207ENST00000425428 ARPC4P59998 168 aa8.4□□□□□ -1.07
CD44-207ENST00000425428 HOXA4Q00056 320 aaPredicted RBP8.4□□□□□ -1.07
CD44-207ENST00000425428 SSBP1Q04837 148 aaKnown RBP8.4□□□□□ -1.07
CD44-207ENST00000425428 LOXL1Q08397 574 aaPredicted RBP8.4□□□□□ -1.07
CD44-207ENST00000425428 PLAC9Q5JTB6 97 aa8.4□□□□□ -1.07
CD44-207ENST00000425428 SIGIRRQ6IA17 410 aa8.4□□□□□ -1.07
CD44-207ENST00000425428 ZNF497Q6ZNH5 498 aa8.4□□□□□ -1.07
CD44-207ENST00000425428 C17orf107Q6ZR85 190 aa8.4□□□□□ -1.07
CD44-207ENST00000425428 BTN2A1Q7KYR7 527 aa8.4□□□□□ -1.07
CD44-207ENST00000425428 CCDC190Q86UF4 302 aa8.4□□□□□ -1.07
CD44-207ENST00000425428 Q8N402 240 aa8.4□□□□□ -1.07
CD44-207ENST00000425428 DMRTB1Q96MA1 342 aa8.4□□□□□ -1.07
CD44-207ENST00000425428 ST6GALNAC5Q9BVH7 336 aa8.4□□□□□ -1.07
CD44-207ENST00000425428 KIF25Q9UIL4 384 aa8.4□□□□□ -1.07
CD44-207ENST00000425428 UBE2J1Q9Y385 318 aaPredicted RBP8.4□□□□□ -1.07
CD44-207ENST00000425428 APCP25054 2843 aa8.4□□□□□ -1.07
CD44-207ENST00000425428 TACC2O95359 2948 aa8.39□□□□□ -1.07
CD44-207ENST00000425428 UNC79Q9P2D8 2635 aa8.39□□□□□ -1.07
CD44-207ENST00000425428 PPIAL4CA0A0B4J2A2 164 aa8.39□□□□□ -1.07
CD44-207ENST00000425428 A0A0G2JMP0 313 aa8.39□□□□□ -1.07
CD44-207ENST00000425428 A0A0X1KG70 313 aa8.39□□□□□ -1.07
CD44-207ENST00000425428 RNF223E7ERA6 249 aa8.39□□□□□ -1.07
CD44-207ENST00000425428 CTDSPLO15194 276 aa8.39□□□□□ -1.07
CD44-207ENST00000425428 MELTFP08582 738 aa8.39□□□□□ -1.07
CD44-207ENST00000425428 PPIAL4GP0DN37 164 aa8.39□□□□□ -1.07
CD44-207ENST00000425428 RCVRNP35243 200 aa8.39□□□□□ -1.07
CD44-207ENST00000425428 FAUP35544 74 aaKnown RBP8.39□□□□□ -1.07
CD44-207ENST00000425428 OR3A3P47888 321 aa8.39□□□□□ -1.07
CD44-207ENST00000425428 PAX5Q02548 391 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms