RNA–Protein interactions for RNA: ENST00000424143.5

C9orf3-204, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 1,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-204ENST00000424143 RAB40CQ96S21 281 aa13.11□□□□□ -0.31
C9orf3-204ENST00000424143 P2RX4Q99571 388 aa13.11□□□□□ -0.31
C9orf3-204ENST00000424143 C1QTNF5Q9BXJ0 243 aa13.11□□□□□ -0.31
C9orf3-204ENST00000424143 PARD6GQ9BYG4 376 aaPredicted RBP13.11□□□□□ -0.31
C9orf3-204ENST00000424143 OR2H1Q9GZK4 316 aa13.11□□□□□ -0.31
C9orf3-204ENST00000424143 CISD1Q9NZ45 108 aaKnown RBP13.11□□□□□ -0.31
C9orf3-204ENST00000424143 MRPS18CQ9Y3D5 142 aaKnown RBP13.11□□□□□ -0.31
C9orf3-204ENST00000424143 RNF115Q9Y4L5 304 aa13.11□□□□□ -0.31
C9orf3-204ENST00000424143 A0A1B0GU03 582 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 IFITM10A6NMD0 228 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 ZNF32P17041 273 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 DYNLT3P51808 116 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 HLA-DRB3P79483 266 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 IGSF11Q5DX21 431 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 RAET1LQ5VY80 246 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 OR2AE1Q8NHA4 323 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 Q8WTZ3 238 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 PSMG3Q9BT73 122 aaPredicted RBP13.1□□□□□ -0.31
C9orf3-204ENST00000424143 CTDSP1Q9GZU7 261 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 WNT5BQ9H1J7 359 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 ZNF442Q9H7R0 627 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 GLRX2Q9NS18 164 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 SLC7A10Q9NS82 523 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 ZNF581Q9P0T4 197 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 GON4LQ3T8J9 2241 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 SPAG17Q6Q759 2223 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 MYO9BQ13459 2157 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 IGHV1-45A0A0A0MS14 117 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 IGHV5-10-1A0A0J9YXX1 117 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 ZNF716A6NP11 495 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 GPR37O15354 613 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 IFNA10P01566 189 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 HIST1H1BP16401 226 aaKnown RBP13.1□□□□□ -0.31
C9orf3-204ENST00000424143 ITGA3P26006 1051 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 S100GP29377 79 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 SRD5A2P31213 254 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 SSR4P51571 173 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 B3GALT5-AS1P59052 145 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 PSG4Q00888 419 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 PYY3Q5JQD4 70 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 MEX3BQ6ZN04 569 aaKnown RBP13.1□□□□□ -0.31
C9orf3-204ENST00000424143 ZFP62Q8NB50 900 aaPredicted RBP13.1□□□□□ -0.31
C9orf3-204ENST00000424143 EXTL1Q92935 676 aa13.1□□□□□ -0.31
C9orf3-204ENST00000424143 SHANK1Q9Y566 2161 aa13.09□□□□□ -0.31
C9orf3-204ENST00000424143 TRBV24-1A0A075B6N3 115 aa13.09□□□□□ -0.31
C9orf3-204ENST00000424143 ZNF587BE7ETH6 402 aa13.09□□□□□ -0.31
C9orf3-204ENST00000424143 ADAM20O43506 726 aa13.09□□□□□ -0.31
C9orf3-204ENST00000424143 PTBP3O95758 552 aaKnown RBP13.09□□□□□ -0.31
C9orf3-204ENST00000424143 PAX9P55771 341 aa13.09□□□□□ -0.31
C9orf3-204ENST00000424143 FGF12P61328 243 aa13.09□□□□□ -0.31
C9orf3-204ENST00000424143 IL11RAQ14626 422 aa13.09□□□□□ -0.31
C9orf3-204ENST00000424143 NCMAPQ5T1S8 102 aa13.09□□□□□ -0.31
C9orf3-204ENST00000424143 PRAMEF20Q5VT98 475 aa13.09□□□□□ -0.31
C9orf3-204ENST00000424143 PLCXD3Q63HM9 321 aa13.09□□□□□ -0.31
C9orf3-204ENST00000424143 ABLIM2Q6H8Q1 611 aa13.09□□□□□ -0.31
C9orf3-204ENST00000424143 CMTM1Q8IZ96 169 aa13.09□□□□□ -0.31
C9orf3-204ENST00000424143 CPNE4Q96A23 557 aaPredicted RBP13.09□□□□□ -0.31
C9orf3-204ENST00000424143 TMEM45BQ96B21 275 aa13.09□□□□□ -0.31
C9orf3-204ENST00000424143 ZNF837Q96EG3 531 aaPredicted RBP13.09□□□□□ -0.31
C9orf3-204ENST00000424143 SGCZQ96LD1 299 aa13.09□□□□□ -0.31
C9orf3-204ENST00000424143 ABHD14AQ9BUJ0 271 aa13.09□□□□□ -0.31
C9orf3-204ENST00000424143 BCL2L14Q9BZR8 327 aa13.09□□□□□ -0.31
C9orf3-204ENST00000424143 PLK3Q9H4B4 646 aa13.09□□□□□ -0.31
C9orf3-204ENST00000424143 LIPGQ9Y5X9 500 aa13.09□□□□□ -0.31
C9orf3-204ENST00000424143 SLC22A20A6NK97 555 aa13.08□□□□□ -0.32
C9orf3-204ENST00000424143 SSSCA1O60232 199 aa13.08□□□□□ -0.32
C9orf3-204ENST00000424143 HIST1H2BKO60814 126 aa13.08□□□□□ -0.32
C9orf3-204ENST00000424143 IFNA5P01569 189 aa13.08□□□□□ -0.32
C9orf3-204ENST00000424143 HIST1H2BJP06899 126 aa13.08□□□□□ -0.32
C9orf3-204ENST00000424143 COX5BP10606 129 aa13.08□□□□□ -0.32
C9orf3-204ENST00000424143 HIST1H2BOP23527 126 aa13.08□□□□□ -0.32
C9orf3-204ENST00000424143 HIST1H2BBP33778 126 aa13.08□□□□□ -0.32
C9orf3-204ENST00000424143 HIST1H2BDP58876 126 aa13.08□□□□□ -0.32
C9orf3-204ENST00000424143 RPL23AP62750 156 aaKnown RBP13.08□□□□□ -0.32
C9orf3-204ENST00000424143 HIST1H2BCP62807 126 aa13.08□□□□□ -0.32
C9orf3-204ENST00000424143 HAGHQ16775 308 aa13.08□□□□□ -0.32
C9orf3-204ENST00000424143 HIST2H2BEQ16778 126 aa13.08□□□□□ -0.32
C9orf3-204ENST00000424143 ZNF674Q2M3X9 581 aa13.08□□□□□ -0.32
C9orf3-204ENST00000424143 CXorf66Q5JRM2 361 aaPredicted RBP13.08□□□□□ -0.32
C9orf3-204ENST00000424143 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.08□□□□□ -0.32
C9orf3-204ENST00000424143 ZNF600Q6ZNG1 722 aa13.08□□□□□ -0.32
C9orf3-204ENST00000424143 STX12Q86Y82 276 aa13.08□□□□□ -0.32
C9orf3-204ENST00000424143 CYB561D1Q8N8Q1 229 aa13.08□□□□□ -0.32
C9orf3-204ENST00000424143 DYRK2Q92630 601 aa13.08□□□□□ -0.32
C9orf3-204ENST00000424143 HIST1H2BHQ93079 126 aa13.08□□□□□ -0.32
C9orf3-204ENST00000424143 LSM10Q969L4 123 aaKnown RBP13.08□□□□□ -0.32
C9orf3-204ENST00000424143 HIST1H2BNQ99877 126 aa13.08□□□□□ -0.32
C9orf3-204ENST00000424143 HIST1H2BMQ99879 126 aa13.08□□□□□ -0.32
C9orf3-204ENST00000424143 SRXN1Q9BYN0 137 aa13.08□□□□□ -0.32
C9orf3-204ENST00000424143 MMP24Q9Y5R2 645 aa13.08□□□□□ -0.32
C9orf3-204ENST00000424143 ATP23Q9Y6H3 246 aa13.08□□□□□ -0.32
C9orf3-204ENST00000424143 A0A1W2PQM1 296 aa13.07□□□□□ -0.32
C9orf3-204ENST00000424143 CDRT15L2A8MXV6 281 aa13.07□□□□□ -0.32
C9orf3-204ENST00000424143 NPIPB11E5RHQ5 1161 aa13.07□□□□□ -0.32
C9orf3-204ENST00000424143 PPP1R2P9O14990 202 aa13.07□□□□□ -0.32
C9orf3-204ENST00000424143 YIF1AO95070 293 aa13.07□□□□□ -0.32
C9orf3-204ENST00000424143 TMEM50AO95807 157 aa13.07□□□□□ -0.32
C9orf3-204ENST00000424143 CYB5R3P00387 301 aaPredicted RBP13.07□□□□□ -0.32
C9orf3-204ENST00000424143 MMP7P09237 267 aaPredicted RBP13.07□□□□□ -0.32
C9orf3-204ENST00000424143 CXCL1P09341 107 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms