RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 ZNF230Q9UIE0 474 aaPredicted RBP14.35□□□□□ -0.11
CCDC28B-202ENST00000421922 HRNRQ86YZ3 2850 aaPredicted RBP14.35□□□□□ -0.11
CCDC28B-202ENST00000421922 IGKV1D-17A0A075B6S4 117 aa14.34□□□□□ -0.11
CCDC28B-202ENST00000421922 TMEM30CPA0ZSE6 113 aa14.34□□□□□ -0.11
CCDC28B-202ENST00000421922 PLA2G10O15496 165 aa14.34□□□□□ -0.11
CCDC28B-202ENST00000421922 CD3DP04234 171 aa14.34□□□□□ -0.11
CCDC28B-202ENST00000421922 IFNA6P05013 189 aa14.34□□□□□ -0.11
CCDC28B-202ENST00000421922 RBMXP38159 391 aaKnown RBP14.34□□□□□ -0.11
CCDC28B-202ENST00000421922 CARTPTQ16568 116 aa14.34□□□□□ -0.11
CCDC28B-202ENST00000421922 STUMQ69YW2 141 aa14.34□□□□□ -0.11
CCDC28B-202ENST00000421922 OR52W1Q6IF63 320 aa14.34□□□□□ -0.11
CCDC28B-202ENST00000421922 ZNF782Q6ZMW2 699 aaPredicted RBP14.34□□□□□ -0.11
CCDC28B-202ENST00000421922 MOB1BQ7L9L4 216 aa14.34□□□□□ -0.11
CCDC28B-202ENST00000421922 SLC36A1Q7Z2H8 476 aa14.34□□□□□ -0.11
CCDC28B-202ENST00000421922 CD177Q8N6Q3 437 aa14.34□□□□□ -0.11
CCDC28B-202ENST00000421922 TMEM185AQ8NFB2 350 aa14.34□□□□□ -0.11
CCDC28B-202ENST00000421922 OR4K15Q8NH41 348 aa14.34□□□□□ -0.11
CCDC28B-202ENST00000421922 ANGPTL6Q8NI99 470 aa14.34□□□□□ -0.11
CCDC28B-202ENST00000421922 MAFIPQ8WZ33 124 aa14.34□□□□□ -0.11
CCDC28B-202ENST00000421922 SNX22Q96L94 193 aa14.34□□□□□ -0.11
CCDC28B-202ENST00000421922 PLEKHF2Q9H8W4 249 aa14.34□□□□□ -0.11
CCDC28B-202ENST00000421922 TMEM165Q9HC07 324 aa14.34□□□□□ -0.11
CCDC28B-202ENST00000421922 HRASLSQ9HDD0 168 aa14.34□□□□□ -0.11
CCDC28B-202ENST00000421922 DISC1C4P0D8 188 aa14.33□□□□□ -0.11
CCDC28B-202ENST00000421922 BTG1P62324 171 aa14.33□□□□□ -0.11
CCDC28B-202ENST00000421922 IL13RA1P78552 427 aa14.33□□□□□ -0.11
CCDC28B-202ENST00000421922 HIST2H2BCQ6DN03 193 aa14.33□□□□□ -0.11
CCDC28B-202ENST00000421922 OR4S1Q8NGB4 309 aa14.33□□□□□ -0.11
CCDC28B-202ENST00000421922 OR5D13Q8NGL4 314 aa14.33□□□□□ -0.11
CCDC28B-202ENST00000421922 OR4C16Q8NGL9 310 aa14.33□□□□□ -0.11
CCDC28B-202ENST00000421922 CHPT1Q8WUD6 406 aa14.33□□□□□ -0.11
CCDC28B-202ENST00000421922 RAB1CQ92928 201 aa14.33□□□□□ -0.11
CCDC28B-202ENST00000421922 CYYR1Q96J86 154 aa14.33□□□□□ -0.11
CCDC28B-202ENST00000421922 DNTTIP1Q9H147 329 aa14.33□□□□□ -0.11
CCDC28B-202ENST00000421922 DPAGT1Q9H3H5 408 aa14.33□□□□□ -0.11
CCDC28B-202ENST00000421922 ZNF222Q9UK12 451 aa14.33□□□□□ -0.11
CCDC28B-202ENST00000421922 TRAPPC2LQ9UL33 140 aa14.33□□□□□ -0.11
CCDC28B-202ENST00000421922 ANAPC10Q9UM13 185 aa14.33□□□□□ -0.11
CCDC28B-202ENST00000421922 MGAT4AQ9UM21 535 aa14.33□□□□□ -0.11
CCDC28B-202ENST00000421922 CREBBPQ92793 2442 aa14.33□□□□□ -0.12
CCDC28B-202ENST00000421922 KIR2DS1A0A191URI9 304 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 FUOMA2VDF0 154 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 LYNX1G3V0Z9 82 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 M0QYG6 137 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 MGST3O14880 152 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 NDUFA2O43678 99 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 PSPNO60542 156 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 TFF1P04155 84 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 AMY2AP04746 511 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 CSN2P05814 226 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 LYNX1P0DP58 116 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 NAT1P18440 290 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 COL8A2P25067 703 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 HRH1P35367 487 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 KIR2DS4P43632 304 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 OR3A1P47881 315 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 EFNA4P52798 201 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 EDDM3AQ14507 147 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 KIR2DS1Q14954 304 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 KRBOX4Q5JUW0 171 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 ZNF497Q6ZNH5 498 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 GDPD3Q7L5L3 318 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 CENPSQ8N2Z9 138 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 MUC20Q8N307 709 aaPredicted RBP14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 C14orf79Q96F83 325 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 SDSLQ96GA7 329 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 MED30Q96HR3 178 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 CCL13Q99616 98 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 METRNQ9UJH8 293 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 TEP1Q99973 2627 aaKnown RBP14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 TMEM82A0PJX8 343 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 POM121CA8CG34 1229 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 VGLL3A8MV65 326 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 TMPRSS2O15393 492 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 PPIHO43447 177 aaKnown RBP14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 NAPSAO96009 420 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 F12P00748 615 aaPredicted RBP14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 PMP2P02689 132 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 SSTR2P30874 369 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 FAAP20Q6NZ36 180 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 C17orf107Q6ZR85 190 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 NRARPQ7Z6K4 114 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 TMEM17Q86X19 198 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 PLPPR1Q8TBJ4 325 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 MRPL30Q8TCC3 161 aaKnown RBP14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 SNAPC3Q92966 411 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 GAFA1Q96PS6 74 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 FAM234AQ9H0X4 552 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 CHODLQ9H9P2 273 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 KCNIP1Q9NZI2 227 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 COPZ2Q9P299 210 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 ANXA10Q9UJ72 324 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 SCP2D1Q9UJQ7 156 aa14.32□□□□□ -0.12
CCDC28B-202ENST00000421922 MEIKINA0A087WXM9 373 aa14.31□□□□□ -0.12
CCDC28B-202ENST00000421922 TRBV6-6A0A0A6YYG2 114 aa14.31□□□□□ -0.12
CCDC28B-202ENST00000421922 ADAM20O43506 726 aa14.31□□□□□ -0.12
CCDC28B-202ENST00000421922 LY6HO94772 140 aa14.31□□□□□ -0.12
CCDC28B-202ENST00000421922 CD74P04233 296 aa14.31□□□□□ -0.12
CCDC28B-202ENST00000421922 TSPAN5P62079 268 aa14.31□□□□□ -0.12
CCDC28B-202ENST00000421922 AESQ08117 197 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms