RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 CYTL1Q9NRR1 136 aa12.69□□□□□ -0.38
USP4-203ENST00000415188 TMEM100Q9NV29 134 aa12.69□□□□□ -0.38
USP4-203ENST00000415188 GPR160Q9UJ42 338 aa12.69□□□□□ -0.38
USP4-203ENST00000415188 SPEF1Q9Y4P9 236 aa12.69□□□□□ -0.38
USP4-203ENST00000415188 SFTPBP07988 381 aa12.68□□□□□ -0.38
USP4-203ENST00000415188 PLP2Q04941 152 aa12.68□□□□□ -0.38
USP4-203ENST00000415188 PRDX4Q13162 271 aa12.68□□□□□ -0.38
USP4-203ENST00000415188 RAB32Q13637 225 aa12.68□□□□□ -0.38
USP4-203ENST00000415188 CEACAM21Q3KPI0 293 aa12.68□□□□□ -0.38
USP4-203ENST00000415188 ABCA11PQ4W5N1 156 aa12.68□□□□□ -0.38
USP4-203ENST00000415188 FAM74A1Q5RGS3 127 aa12.68□□□□□ -0.38
USP4-203ENST00000415188 LINC00596Q86U02 117 aa12.68□□□□□ -0.38
USP4-203ENST00000415188 SLC38A6Q8IZM9 456 aa12.68□□□□□ -0.38
USP4-203ENST00000415188 FAM185AQ8N0U4 392 aa12.68□□□□□ -0.38
USP4-203ENST00000415188 RNF141Q8WVD5 230 aa12.68□□□□□ -0.38
USP4-203ENST00000415188 NANOS1Q8WY41 292 aaKnown RBP12.68□□□□□ -0.38
USP4-203ENST00000415188 MOB3AQ96BX8 217 aa12.68□□□□□ -0.38
USP4-203ENST00000415188 RRNAD1Q96FB5 475 aaKnown RBP12.68□□□□□ -0.38
USP4-203ENST00000415188 SYT3Q9BQG1 590 aa12.68□□□□□ -0.38
USP4-203ENST00000415188 PLSCR2Q9NRY7 297 aa12.68□□□□□ -0.38
USP4-203ENST00000415188 TAS2R3Q9NYW6 316 aa12.68□□□□□ -0.38
USP4-203ENST00000415188 STARD10Q9Y365 291 aa12.68□□□□□ -0.38
USP4-203ENST00000415188 HOXD4P09016 255 aaPredicted RBP12.67□□□□□ -0.38
USP4-203ENST00000415188 HOXB5P09067 269 aa12.67□□□□□ -0.38
USP4-203ENST00000415188 FGF12P61328 243 aa12.67□□□□□ -0.38
USP4-203ENST00000415188 SLC10A1Q14973 349 aa12.67□□□□□ -0.38
USP4-203ENST00000415188 MPV17LQ2QL34 196 aa12.67□□□□□ -0.38
USP4-203ENST00000415188 IAH1Q2TAA2 248 aaPredicted RBP12.67□□□□□ -0.38
USP4-203ENST00000415188 TUSC1Q2TAM9 212 aa12.67□□□□□ -0.38
USP4-203ENST00000415188 SLC22A25Q6T423 547 aa12.67□□□□□ -0.38
USP4-203ENST00000415188 MKXQ8IYA7 352 aa12.67□□□□□ -0.38
USP4-203ENST00000415188 RPRMLQ8N4K4 120 aa12.67□□□□□ -0.38
USP4-203ENST00000415188 MARC2Q969Z3 335 aa12.67□□□□□ -0.38
USP4-203ENST00000415188 PAPOLGQ9BWT3 736 aaKnown RBP12.67□□□□□ -0.38
USP4-203ENST00000415188 C1QTNF6Q9BXI9 259 aa12.67□□□□□ -0.38
USP4-203ENST00000415188 OR5AC2Q9NZP5 309 aa12.67□□□□□ -0.38
USP4-203ENST00000415188 LIPGQ9Y5X9 500 aa12.67□□□□□ -0.38
USP4-203ENST00000415188 SCO1O75880 301 aa12.66□□□□□ -0.38
USP4-203ENST00000415188 IGHV3-9P01782 118 aa12.66□□□□□ -0.38
USP4-203ENST00000415188 GAPDHP04406 335 aaKnown RBP12.66□□□□□ -0.38
USP4-203ENST00000415188 OPRM1P35372 400 aa12.66□□□□□ -0.38
USP4-203ENST00000415188 PIGPP57054 158 aa12.66□□□□□ -0.38
USP4-203ENST00000415188 HERV-K104P61576 105 aa12.66□□□□□ -0.38
USP4-203ENST00000415188 SRPXP78539 464 aa12.66□□□□□ -0.38
USP4-203ENST00000415188 TMEM187Q14656 261 aa12.66□□□□□ -0.38
USP4-203ENST00000415188 ZNF585AQ6P3V2 769 aa12.66□□□□□ -0.38
USP4-203ENST00000415188 UNQ6126/PRO20091Q6UXV3 157 aa12.66□□□□□ -0.38
USP4-203ENST00000415188 SLC25A26Q70HW3 274 aa12.66□□□□□ -0.38
USP4-203ENST00000415188 ZNF295-AS1Q8N0V1 137 aa12.66□□□□□ -0.38
USP4-203ENST00000415188 OR5A2Q8NGI9 324 aa12.66□□□□□ -0.38
USP4-203ENST00000415188 POM121L2Q96KW2 1035 aa12.66□□□□□ -0.38
USP4-203ENST00000415188 SLC5A7Q9GZV3 580 aa12.66□□□□□ -0.38
USP4-203ENST00000415188 PLK3Q9H4B4 646 aa12.66□□□□□ -0.38
USP4-203ENST00000415188 ZNF442Q9H7R0 627 aa12.66□□□□□ -0.38
USP4-203ENST00000415188 ZDHHC11Q9H8X9 412 aa12.66□□□□□ -0.38
USP4-203ENST00000415188 PLEKHA2Q9HB19 425 aa12.66□□□□□ -0.38
USP4-203ENST00000415188 FBXO9Q9UK97 447 aaPredicted RBP12.66□□□□□ -0.38
USP4-203ENST00000415188 ZNF175Q9Y473 711 aa12.66□□□□□ -0.38
USP4-203ENST00000415188 ARHGAP21Q5T5U3 1957 aa12.66□□□□□ -0.38
USP4-203ENST00000415188 ZNF407Q9C0G0 2248 aa12.66□□□□□ -0.38
USP4-203ENST00000415188 CSMD2Q7Z408 3487 aa12.66□□□□□ -0.38
USP4-203ENST00000415188 ADGRG4Q8IZF6 3080 aa12.66□□□□□ -0.38
USP4-203ENST00000415188 C5orf49A4QMS7 147 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 OR5B21A6NL26 309 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 MPTX1A8MV57 137 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 H7C1Q1 480 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 J3QW42 95 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 HLA-HP01893 362 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 CD79AP11912 226 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 S100A10P60903 97 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 TAGLNQ01995 201 aaKnown RBP12.65□□□□□ -0.38
USP4-203ENST00000415188 GGNBP1Q5YKI7 109 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 TFAP2EQ6VUC0 442 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 CALHM1Q8IU99 346 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 LGI3Q8N145 548 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 RTN4IP1Q8WWV3 396 aaPredicted RBP12.65□□□□□ -0.38
USP4-203ENST00000415188 GTF3AQ92664 365 aaKnown RBP12.65□□□□□ -0.38
USP4-203ENST00000415188 ARL11Q969Q4 196 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 SAT2Q96F10 170 aaPredicted RBP12.65□□□□□ -0.38
USP4-203ENST00000415188 HIST1H2AAQ96QV6 131 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 RSRP1Q9BUV0 290 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 RIMS4Q9H426 269 aaPredicted RBP12.65□□□□□ -0.38
USP4-203ENST00000415188 LDAHQ9H6V9 325 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 PRR13Q9NZ81 148 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 GSKIPQ9P0R6 139 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 RCC2Q9P258 522 aaKnown RBP12.65□□□□□ -0.38
USP4-203ENST00000415188 DCHS2Q6V1P9 2916 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 A0A096LPE4 126 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 A0A1W2PPZ6 126 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 MSGN1A6NI15 193 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 LGALS8O00214 317 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 DEDDO75618 318 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 OR7C1O76099 320 aaPredicted RBP12.65□□□□□ -0.38
USP4-203ENST00000415188 GLAP06280 429 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 FCGR2CP31995 323 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 APLNRP35414 380 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 RAB1AP62820 205 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 IL34Q6ZMJ4 242 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 LIAT1Q6ZQX7 453 aa12.65□□□□□ -0.38
USP4-203ENST00000415188 OR5L1Q8NGL2 311 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms