RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 AKIP1Q9NQ31 210 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 MUC20Q8N307 709 aaPredicted RBP11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 OR10J6PQ8NGY7 276 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 CA10Q9NS85 328 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 RAC3P60763 192 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 TMUB1Q9BVT8 246 aa11.89□□□□□ -0.51
CCDC88A-204ENST00000413716 SFT2D2O95562 160 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 KCNAB1Q14722 419 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 MRGPRGQ86SM5 289 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 DDA1Q9BW61 102 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 PPP6CO00743 305 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 GUCA2AQ02747 115 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 RTP5Q14D33 572 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 SPRED3Q2MJR0 410 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 ZNF385CQ66K41 422 aaPredicted RBP11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 IGKV6D-41A0A0C4DH26 115 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 PXNP49023 591 aaPredicted RBP11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 ISL1P61371 349 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 RTP2Q5QGT7 225 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 EBLN2Q6P2I7 272 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 PAAF1Q9BRP4 392 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 A0A0U1RQS6 177 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 WTIPA6NIX2 430 aaPredicted RBP11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 SMIM18P0DKX4 95 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 PMELP40967 661 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 SIX1Q15475 284 aaPredicted RBP11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 KCNMB1Q16558 191 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 C1RLQ9NZP8 487 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 NEURL4Q96JN8 1562 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 LIPFP07098 398 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 CBLN2Q8IUK8 224 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 KIR3DX1Q9H7L2 352 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 SLC52A3Q9NQ40 469 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 SPNP16150 400 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 CD22P20273 847 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 SLC25A35Q3KQZ1 300 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 RND1Q92730 232 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 CA1P00915 261 aaPredicted RBP11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 MT-ND6P03923 174 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 FTH1P19P0C7X4 201 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 DDTP30046 118 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 CKS1BP61024 79 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 ST3GAL2Q16842 350 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 ABHD17CQ6PCB6 329 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 PRSS54Q6PEW0 395 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 TEX29Q8N6K0 151 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 FAM222BQ8WU58 562 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 BADQ92934 168 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 FBXO17Q96EF6 278 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 PIK3C2AO00443 1686 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 TMEM189A5PLL7 270 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 TMEM189-UBE2V1I3L0A0 370 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 MFAP2P55001 183 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 PRSS36Q5K4E3 855 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 OR10AC1Q8NH08 325 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 TBX21Q9UL17 535 aa11.88□□□□□ -0.51
CCDC88A-204ENST00000413716 PLAUP00749 431 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 MORN4Q8NDC4 146 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 WDR34Q96EX3 536 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 SLC25A19Q9HC21 320 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 IGKV3-7A0A075B6H7 116 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 RNPS1Q15287 305 aaKnown RBP11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 RNFT1Q5M7Z0 435 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 CLEC18BQ6UXF7 455 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 STPG2Q8N412 459 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 SSMEM1Q8WWF3 244 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 RHOVQ96L33 236 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 TNFRSF19Q9NS68 423 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 LRRC37A3O60309 1634 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 HLA-DRB1P01911 266 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 WNT5AP41221 380 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 RBPJLQ9UBG7 517 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 FOCADQ5VW36 1801 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 A8MWL6 223 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 NKAIN4Q8IVV8 208 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 OR4D9Q8NGE8 314 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 OR4X1Q8NH49 305 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 OR2V2Q96R30 315 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 NRSN2Q9GZP1 204 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 SIT1Q9Y3P8 196 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 LEPROTL1O95214 131 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 HIST1H1DP16402 221 aaKnown RBP11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 EPHA8P29322 1005 aaPredicted RBP11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 OR2K2Q8NGT1 345 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 OR5AC2Q9NZP5 309 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 LEUTXA8MZ59 168 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 SLC17A3O00476 420 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 SLURP2P0DP57 97 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 MMP9P14780 707 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 RAG2P55895 527 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 GHITMQ9H3K2 345 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 HCFC1R1Q9NWW0 138 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 PLEKHB1Q9UF11 243 aaPredicted RBP11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 LRP12Q9Y561 859 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 FAM157AC9JC47 383 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 LDLRAD3Q86YD5 345 aa11.87□□□□□ -0.51
CCDC88A-204ENST00000413716 AMY1AP04745 511 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 YIPF6Q96EC8 236 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 NPFFR1Q9GZQ6 430 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 TRGV8A0A0C4DH27 118 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms