RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 IGKV1-12A0A0C4DH73 117 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 KIAA1324LA8MWY0 1029 aaPredicted RBP4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 SHISA8B8ZZ34 492 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 ZNF587BE7ETH6 402 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 MKRN2OSH3BPM6 223 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 PHF1O43189 567 aaPredicted RBP4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 IGKV1D-12P01611 117 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 DBHP09172 617 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 FGF5P12034 268 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 CD200P41217 278 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 FHITP49789 147 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 HLA-DRB3P79483 266 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 DLK1P80370 383 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 PCOLCEQ15113 449 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 TAF9Q16594 264 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 PYY3Q5JQD4 70 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 OR2B11Q5JQS5 317 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 PEAR1Q5VY43 1037 aaPredicted RBP4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 CARD17Q5XLA6 110 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 ABLIM2Q6H8Q1 611 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 LCN10Q6JVE6 187 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 C16orf47Q6ZP98 133 aaPredicted RBP4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 Q6ZS52 159 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 ZNF429Q86V71 674 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 TGIF2LYQ8IUE0 185 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 HIST3H2BBQ8N257 126 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 SLC25A45Q8N413 288 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 OR2V1Q8NHB1 315 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 CD300LFQ8TDQ1 290 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 Q8WTZ3 238 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 TMEM171Q8WVE6 324 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 CPNE4Q96A23 557 aaPredicted RBP4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 IMMP1LQ96LU5 166 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 DUSP23Q9BVJ7 150 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 ULBP2Q9BZM5 246 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 LINC00470Q9BZP3 86 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 PLK3Q9H4B4 646 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 PRDM13Q9H4Q3 707 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 PROK2Q9HC23 129 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 GPR173Q9NS66 373 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 DOK5Q9P104 306 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 TIMM9Q9Y5J7 89 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 COL27A1Q8IZC6 1860 aaPredicted RBP4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 NKX2-6A6NCS4 301 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 C2CD4DB7Z1M9 353 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 FAM90A26D6RGX4 464 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 GEMIN2O14893 280 aaKnown RBP4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 ZIC3O60481 467 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 HIST1H2BKO60814 126 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 OPN1MWP04001 364 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 ARG1P05089 322 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 HIST1H2BJP06899 126 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 OPN1MW2P0DN77 364 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 OPN1MW3P0DN78 364 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 HIST1H2BOP23527 126 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 HIST1H2BBP33778 126 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 PAX9P55771 341 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 HIST1H2BDP58876 126 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 UBE2KP61086 200 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 FGF12P61328 243 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 HIST1H2BCP62807 126 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 HIST2H2BEQ16778 126 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 FAM90A2PQ658T7 463 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 IL22RA1Q8N6P7 574 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 HIST1H2BHQ93079 126 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 CYYR1Q96J86 154 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 ZNF385AQ96PM9 386 aaKnown RBP4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 HIST1H2BNQ99877 126 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 HIST1H2BMQ99879 126 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 RARRES2Q99969 163 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 CABLES2Q9BTV7 478 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 DEFB126Q9BYW3 111 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 RARRES3Q9UL19 164 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 ST3GAL6Q9Y274 331 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 ATP23Q9Y6H3 246 aa4.94□□□□□ -1.62
CCDC88A-203ENST00000412148 NCKAP5O14513 1909 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 ZNF716A6NP11 495 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 CLDN34H7C241 214 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 DVL1O14640 695 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 TXNL1O43396 289 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 SCRG1O75711 98 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 CBR3O75828 277 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 TK1P04183 234 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 APLNRP35414 380 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 AKR1C3P42330 323 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 HAAOP46952 286 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 PDLIM4P50479 330 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 RRADP55042 308 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 B3GALT5-AS1P59052 145 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 PKIAP61925 76 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 PRDX4Q13162 271 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 MSMO1Q15800 293 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 TMEM249Q2WGJ8 235 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 SP6Q3SY56 376 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 AKR1C8PQ5T2L2 129 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 FAM69BQ5VUD6 431 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 BRICD5Q6PL45 260 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 ZNF695Q8IW36 515 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 C1orf87Q8N0U7 546 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms