RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 KIAA1549Q9HCM3 1950 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 TRAV20A0A0B4J274 112 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 IGKV1D-13A0A0B4J2D9 117 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 H3BQ15 152 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 DNPH1O43598 174 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 NXPH3O95157 252 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 KLK3P07288 261 aaPredicted RBP10.92□□□□□ -0.66
SHMT1-205ENST00000395684 RFPL3SP0C7P2 107 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 IGKV1-13P0DP09 117 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 EIF2S3P41091 472 aaKnown RBP10.92□□□□□ -0.66
SHMT1-205ENST00000395684 CLDN15P56746 228 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 SRPXP78539 464 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 C1QL4Q86Z23 238 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 FAM185AQ8N0U4 392 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 TMEM217Q8N7C4 229 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 TCTEX1D2Q8WW35 142 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 EDARADDQ8WWZ3 215 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 NAT6Q93015 286 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 SIGLEC12Q96PQ1 595 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 LIPGQ9Y5X9 500 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 HSD17B6O14756 317 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 SRP19P09132 144 aaKnown RBP10.92□□□□□ -0.66
SHMT1-205ENST00000395684 CCL4P13236 92 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 BCL3P20749 454 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 DYNLT3P51808 116 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 CEBPGP53567 150 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 RUNX1Q01196 453 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 IL11RAQ14626 422 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 HERPUD1Q15011 391 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 ACER2Q5QJU3 275 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 SLC23A3Q6PIS1 610 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 PLPPR1Q8TBJ4 325 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 RAB39BQ96DA2 213 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 GPR35Q9HC97 309 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 CRIM1Q9NZV1 1036 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 MMP24Q9Y5R2 645 aa10.92□□□□□ -0.66
SHMT1-205ENST00000395684 H0YL77 283 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 IFNA17P01571 189 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 IGHV3-9P01782 118 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 MMP7P09237 267 aaPredicted RBP10.91□□□□□ -0.66
SHMT1-205ENST00000395684 PI4KAP42356 2102 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 ID3Q02535 119 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 NMSQ5H8A3 153 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 Q8NFD4 153 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 OR10D3Q8NH80 312 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 SPSB4Q96A44 273 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 FGF23Q9GZV9 251 aaPredicted RBP10.91□□□□□ -0.66
SHMT1-205ENST00000395684 SLC25A31Q9H0C2 315 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 Q9N2K0 584 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 PARPBPQ9NWS1 579 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 KIAA1456Q9P272 454 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 IL36RNQ9UBH0 155 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 SLC22A20A6NK97 555 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 NAPSAO96009 420 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 TK1P04183 234 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 SRD5A2P31213 254 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 RPS10P46783 165 aaKnown RBP10.91□□□□□ -0.66
SHMT1-205ENST00000395684 CXCL12P48061 93 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 HLA-BQ31612 363 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 ZNF343Q6P1L6 599 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 WDR5BQ86VZ2 330 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 ADGRG7Q96K78 797 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 C1QTNF5Q9BXJ0 243 aa10.91□□□□□ -0.66
SHMT1-205ENST00000395684 CLEC18AA5D8T8 446 aa10.9□□□□□ -0.66
SHMT1-205ENST00000395684 ZNF732B4DXR9 585 aa10.9□□□□□ -0.66
SHMT1-205ENST00000395684 ATXN7O15265 892 aaPredicted RBP10.9□□□□□ -0.66
SHMT1-205ENST00000395684 HSPA12AO43301 675 aa10.9□□□□□ -0.66
SHMT1-205ENST00000395684 CHST1O43916 411 aa10.9□□□□□ -0.66
SHMT1-205ENST00000395684 YIF1AO95070 293 aa10.9□□□□□ -0.66
SHMT1-205ENST00000395684 IGHV2-70P01814 119 aa10.9□□□□□ -0.66
SHMT1-205ENST00000395684 PCBD1P61457 104 aa10.9□□□□□ -0.66
SHMT1-205ENST00000395684 VAMP2P63027 116 aa10.9□□□□□ -0.66
SHMT1-205ENST00000395684 ICAM4Q14773 271 aa10.9□□□□□ -0.66
SHMT1-205ENST00000395684 FAM209BQ5JX69 171 aa10.9□□□□□ -0.66
SHMT1-205ENST00000395684 Q6ZS49 121 aa10.9□□□□□ -0.66
SHMT1-205ENST00000395684 CLEC18CQ8NCF0 446 aa10.9□□□□□ -0.66
SHMT1-205ENST00000395684 OR8G5Q8NG78 346 aa10.9□□□□□ -0.66
SHMT1-205ENST00000395684 SNIP1Q8TAD8 396 aaKnown RBP10.9□□□□□ -0.66
SHMT1-205ENST00000395684 IFI44Q8TCB0 444 aa10.9□□□□□ -0.66
SHMT1-205ENST00000395684 ABHD3Q8WU67 409 aa10.9□□□□□ -0.66
SHMT1-205ENST00000395684 SPIN2AQ99865 258 aa10.9□□□□□ -0.66
SHMT1-205ENST00000395684 SPIN2BQ9BPZ2 258 aa10.9□□□□□ -0.66
SHMT1-205ENST00000395684 CCL28Q9NRJ3 127 aa10.9□□□□□ -0.66
SHMT1-205ENST00000395684 FAM86C1Q9NVL1 165 aa10.9□□□□□ -0.66
SHMT1-205ENST00000395684 IGKV1-6A0A0C4DH72 117 aa10.9□□□□□ -0.67
SHMT1-205ENST00000395684 HSPB6O14558 160 aa10.9□□□□□ -0.67
SHMT1-205ENST00000395684 TAGLN2P37802 199 aaKnown RBP10.9□□□□□ -0.67
SHMT1-205ENST00000395684 ZNF154Q13106 437 aa10.9□□□□□ -0.67
SHMT1-205ENST00000395684 WIPI1Q5MNZ9 446 aaPredicted RBP10.9□□□□□ -0.67
SHMT1-205ENST00000395684 RIPPLY2Q5TAB7 128 aa10.9□□□□□ -0.67
SHMT1-205ENST00000395684 ABLIM2Q6H8Q1 611 aa10.9□□□□□ -0.67
SHMT1-205ENST00000395684 TDHQ8IZJ6 230 aa10.9□□□□□ -0.67
SHMT1-205ENST00000395684 CYB561D1Q8N8Q1 229 aa10.9□□□□□ -0.67
SHMT1-205ENST00000395684 OR2Y1Q8NGV0 311 aa10.9□□□□□ -0.67
SHMT1-205ENST00000395684 KCNE4Q8WWG9 221 aa10.9□□□□□ -0.67
SHMT1-205ENST00000395684 ZNF845Q96IR2 970 aaPredicted RBP10.9□□□□□ -0.67
SHMT1-205ENST00000395684 TECTBQ96PL2 329 aa10.9□□□□□ -0.67
SHMT1-205ENST00000395684 TMPRSS5Q9H3S3 457 aa10.9□□□□□ -0.67
SHMT1-205ENST00000395684 UBE2ZQ9H832 354 aaPredicted RBP10.9□□□□□ -0.67
SHMT1-205ENST00000395684 ZMAT5Q9UDW3 170 aaKnown RBP10.9□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms