RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 LINC00696Q6ZRV3 163 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 TMEM99Q8N816 258 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 PHLDA3Q9Y5J5 127 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 FCGR3BO75015 233 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 SRSF4Q08170 494 aaKnown RBP11.97□□□□□ -0.49
USP49-203ENST00000394253 BEX4Q9NWD9 120 aaPredicted RBP11.97□□□□□ -0.49
USP49-203ENST00000394253 MTFP1Q9UDX5 166 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 A4GNTQ9UNA3 340 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 SFT2D2O95562 160 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 DMRTA1Q5VZB9 504 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 TM4SF18Q96CE8 201 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 PARP11Q9NR21 331 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 DCCP43146 1447 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 RIMBP3CA6NJZ7 1639 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 RIMBP3BA6NNM3 1639 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 RIMBP3Q9UFD9 1639 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 TMEM255AQ5JRV8 349 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 KISS1RQ969F8 398 aaPredicted RBP11.97□□□□□ -0.49
USP49-203ENST00000394253 ELF5Q9UKW6 265 aaPredicted RBP11.97□□□□□ -0.49
USP49-203ENST00000394253 H1FOOQ8IZA3 346 aaPredicted RBP11.97□□□□□ -0.49
USP49-203ENST00000394253 OR13C6PQ8NH95 151 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 LINC00052Q96N35 136 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 RARRES2Q99969 163 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 TXNDC17Q9BRA2 123 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 TXNRD2Q9NNW7 524 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 HINT3Q9NQE9 182 aaKnown RBP11.97□□□□□ -0.49
USP49-203ENST00000394253 CUL9Q8IWT3 2517 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 SURF2Q15527 256 aaPredicted RBP11.97□□□□□ -0.49
USP49-203ENST00000394253 FBXL6Q8N531 539 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 PHLDA1Q8WV24 401 aaPredicted RBP11.97□□□□□ -0.49
USP49-203ENST00000394253 LRRC29Q8WV35 223 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 DOK1Q99704 481 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 B3GALT4O96024 378 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 MORN1Q5T089 497 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 WDFY2Q96P53 400 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 FGF20Q9NP95 211 aaPredicted RBP11.97□□□□□ -0.49
USP49-203ENST00000394253 C1RLQ9NZP8 487 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 HS3ST2Q9Y278 367 aa11.97□□□□□ -0.49
USP49-203ENST00000394253 AGRNO00468 2067 aa11.96□□□□□ -0.49
USP49-203ENST00000394253 CCL5P13501 91 aa11.96□□□□□ -0.49
USP49-203ENST00000394253 HIST1H1DP16402 221 aaKnown RBP11.96□□□□□ -0.49
USP49-203ENST00000394253 ATF1P18846 271 aa11.96□□□□□ -0.49
USP49-203ENST00000394253 ACSM5Q6NUN0 579 aa11.96□□□□□ -0.49
USP49-203ENST00000394253 MRPL30Q8TCC3 161 aaKnown RBP11.96□□□□□ -0.49
USP49-203ENST00000394253 TMEM249Q2WGJ8 235 aa11.96□□□□□ -0.49
USP49-203ENST00000394253 MEIG1Q5JSS6 88 aa11.96□□□□□ -0.49
USP49-203ENST00000394253 GPRIN1Q7Z2K8 1008 aa11.96□□□□□ -0.49
USP49-203ENST00000394253 SLC16A11Q8NCK7 471 aa11.96□□□□□ -0.49
USP49-203ENST00000394253 PHOSPHO2Q8TCD6 241 aa11.96□□□□□ -0.49
USP49-203ENST00000394253 A0A1B0GWB2 263 aa11.96□□□□□ -0.49
USP49-203ENST00000394253 SERTM1A2A2V5 107 aa11.96□□□□□ -0.49
USP49-203ENST00000394253 HMGN4O00479 90 aa11.96□□□□□ -0.49
USP49-203ENST00000394253 EIF3IQ13347 325 aaKnown RBP11.96□□□□□ -0.49
USP49-203ENST00000394253 OR2Z1Q8NG97 314 aa11.96□□□□□ -0.49
USP49-203ENST00000394253 OR5M9Q8NGP3 310 aa11.96□□□□□ -0.49
USP49-203ENST00000394253 RAB1CQ92928 201 aa11.96□□□□□ -0.49
USP49-203ENST00000394253 KIR2DL4Q99706 377 aa11.96□□□□□ -0.49
USP49-203ENST00000394253 AICDAQ9GZX7 198 aa11.96□□□□□ -0.49
USP49-203ENST00000394253 RAB1BQ9H0U4 201 aa11.96□□□□□ -0.49
USP49-203ENST00000394253 THADAQ6YHU6 1953 aa11.96□□□□□ -0.49
USP49-203ENST00000394253 SP6Q3SY56 376 aa11.96□□□□□ -0.49
USP49-203ENST00000394253 SLCO4C1Q6ZQN7 724 aa11.96□□□□□ -0.49
USP49-203ENST00000394253 COA4Q9NYJ1 87 aa11.96□□□□□ -0.49
USP49-203ENST00000394253 ADAMTS5Q9UNA0 930 aa11.96□□□□□ -0.49
USP49-203ENST00000394253 PRDX2P32119 198 aa11.96□□□□□ -0.5
USP49-203ENST00000394253 LIM2P55344 173 aa11.96□□□□□ -0.5
USP49-203ENST00000394253 GCSAMLQ5JQS6 135 aa11.96□□□□□ -0.5
USP49-203ENST00000394253 ZNF324BQ6AW86 544 aaPredicted RBP11.96□□□□□ -0.5
USP49-203ENST00000394253 MRGPREQ86SM8 312 aa11.96□□□□□ -0.5
USP49-203ENST00000394253 DEFB108BQ8NET1 73 aa11.96□□□□□ -0.5
USP49-203ENST00000394253 OR10AC1Q8NH08 325 aa11.96□□□□□ -0.5
USP49-203ENST00000394253 UBE2FQ969M7 185 aa11.96□□□□□ -0.5
USP49-203ENST00000394253 AUP1Q9Y679 476 aa11.96□□□□□ -0.5
USP49-203ENST00000394253 OR4P4Q8NGL7 312 aa11.96□□□□□ -0.5
USP49-203ENST00000394253 ISG20L2Q9H9L3 353 aaKnown RBP11.96□□□□□ -0.5
USP49-203ENST00000394253 ZNF107Q9UII5 783 aaPredicted RBP11.96□□□□□ -0.5
USP49-203ENST00000394253 KCNE5Q9UJ90 142 aa11.96□□□□□ -0.5
USP49-203ENST00000394253 FTH1P19P0C7X4 201 aa11.96□□□□□ -0.5
USP49-203ENST00000394253 CD22P20273 847 aa11.96□□□□□ -0.5
USP49-203ENST00000394253 INSM1Q01101 510 aaPredicted RBP11.96□□□□□ -0.5
USP49-203ENST00000394253 OR4D9Q8NGE8 314 aa11.96□□□□□ -0.5
USP49-203ENST00000394253 FAM216AQ8WUB2 273 aa11.96□□□□□ -0.5
USP49-203ENST00000394253 KLF13Q9Y2Y9 288 aaPredicted RBP11.96□□□□□ -0.5
USP49-203ENST00000394253 TSC2P49815 1807 aa11.96□□□□□ -0.5
USP49-203ENST00000394253 MALRD1Q5VYJ5 2156 aa11.96□□□□□ -0.5
USP49-203ENST00000394253 CTXND1A0A1B0GTU2 59 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 hADV38S2A0JD32 116 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 ALOX12BO75342 701 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 HCRTO43612 131 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 CYB5R3P00387 301 aaPredicted RBP11.95□□□□□ -0.5
USP49-203ENST00000394253 SOD3P08294 240 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 OR1P1Q8NH06 330 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 GALNT14Q96FL9 552 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 TPSD1Q9BZJ3 242 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 GREB1Q4ZG55 1949 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 A0A0B4J293 547 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 A0A1W2PQM1 296 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 DLX6P56179 175 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 TEPPQ6URK8 271 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 DLEU7Q6UYE1 221 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms