RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 VAMP1P23763 118 aa15.46■□□□□ 0.06
CCDC88C-203ENST00000389856 DTYMKP23919 212 aa15.46■□□□□ 0.06
CCDC88C-203ENST00000389856 CHRFAM7AQ494W8 412 aa15.46■□□□□ 0.06
CCDC88C-203ENST00000389856 VHLLQ6RSH7 139 aa15.46■□□□□ 0.06
CCDC88C-203ENST00000389856 ACOT7LQ6ZUV0 252 aa15.46■□□□□ 0.06
CCDC88C-203ENST00000389856 C6orf201Q7Z4U5 140 aa15.46■□□□□ 0.06
CCDC88C-203ENST00000389856 OR10AD1Q8NGE0 317 aa15.46■□□□□ 0.06
CCDC88C-203ENST00000389856 THAP6Q8TBB0 222 aa15.46■□□□□ 0.06
CCDC88C-203ENST00000389856 WFIKKN1Q96NZ8 548 aa15.46■□□□□ 0.06
CCDC88C-203ENST00000389856 CMSS1Q9BQ75 279 aaKnown RBP15.46■□□□□ 0.06
CCDC88C-203ENST00000389856 GLS2Q9UI32 602 aa15.46■□□□□ 0.06
CCDC88C-203ENST00000389856 FZR1Q9UM11 496 aa15.46■□□□□ 0.06
CCDC88C-203ENST00000389856 ATP23Q9Y6H3 246 aa15.46■□□□□ 0.06
CCDC88C-203ENST00000389856 KANTRA0A1W2PQU2 76 aa15.45■□□□□ 0.06
CCDC88C-203ENST00000389856 MLNRO43193 412 aa15.45■□□□□ 0.06
CCDC88C-203ENST00000389856 GRPP07492 148 aa15.45■□□□□ 0.06
CCDC88C-203ENST00000389856 TNFSF4P23510 183 aa15.45■□□□□ 0.06
CCDC88C-203ENST00000389856 CD200P41217 278 aa15.45■□□□□ 0.06
CCDC88C-203ENST00000389856 ADORA2A-AS1P86434 159 aa15.45■□□□□ 0.06
CCDC88C-203ENST00000389856 BSPH1Q075Z2 132 aa15.45■□□□□ 0.06
CCDC88C-203ENST00000389856 ZNF154Q13106 437 aa15.45■□□□□ 0.06
CCDC88C-203ENST00000389856 RBM39Q14498 530 aaKnown RBP15.45■□□□□ 0.06
CCDC88C-203ENST00000389856 OVCH2Q7RTZ1 564 aa15.45■□□□□ 0.06
CCDC88C-203ENST00000389856 ADAD2Q8NCV1 583 aaKnown RBP15.45■□□□□ 0.06
CCDC88C-203ENST00000389856 MRPL24Q96A35 216 aaKnown RBP15.45■□□□□ 0.06
CCDC88C-203ENST00000389856 PHYHIPLQ96FC7 376 aa15.45■□□□□ 0.06
CCDC88C-203ENST00000389856 TLNRD1Q9H1K6 362 aa15.45■□□□□ 0.06
CCDC88C-203ENST00000389856 SLC25A32Q9H2D1 315 aa15.45■□□□□ 0.06
CCDC88C-203ENST00000389856 FN3KRPQ9HA64 309 aa15.45■□□□□ 0.06
CCDC88C-203ENST00000389856 hCG_1807616A0A1W2PRN6 198 aa15.44■□□□□ 0.06
CCDC88C-203ENST00000389856 DPRXA6NFQ7 191 aa15.44■□□□□ 0.06
CCDC88C-203ENST00000389856 PGA5P0DJD9 388 aa15.44■□□□□ 0.06
CCDC88C-203ENST00000389856 AANATQ16613 207 aa15.44■□□□□ 0.06
CCDC88C-203ENST00000389856 C4orf17Q53FE4 359 aa15.44■□□□□ 0.06
CCDC88C-203ENST00000389856 TOR2AQ5JU69 321 aa15.44■□□□□ 0.06
CCDC88C-203ENST00000389856 SPIN3Q5JUX0 258 aa15.44■□□□□ 0.06
CCDC88C-203ENST00000389856 OR2Z1Q8NG97 314 aa15.44■□□□□ 0.06
CCDC88C-203ENST00000389856 PPP1R1CQ8WVI7 109 aa15.44■□□□□ 0.06
CCDC88C-203ENST00000389856 DIRC2Q96SL1 478 aa15.44■□□□□ 0.06
CCDC88C-203ENST00000389856 C5orf66Q9H5L9 145 aa15.44■□□□□ 0.06
CCDC88C-203ENST00000389856 IFT22Q9H7X7 185 aa15.44■□□□□ 0.06
CCDC88C-203ENST00000389856 SESN1Q9Y6P5 492 aa15.44■□□□□ 0.06
CCDC88C-203ENST00000389856 PKD1L2Q7Z442 2459 aa15.44■□□□□ 0.06
CCDC88C-203ENST00000389856 A6NLC8 198 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 CDIPTO14735 213 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 BCL2L11O43521 198 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 NXPH2O95156 264 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 ZNF660Q6AZW8 331 aaPredicted RBP15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 SIGIRRQ6IA17 410 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 POC1AQ8NBT0 407 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 SYT3Q9BQG1 590 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 NRIP2Q9BQI9 281 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 ST6GALNAC5Q9BVH7 336 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 RIMS4Q9H426 269 aaPredicted RBP15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 MSL2Q9HCI7 577 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 C12orf4Q9NQ89 552 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 EHFQ9NZC4 300 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 PFDN2Q9UHV9 154 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 ZDHHC8Q9ULC8 765 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 TRBV6-7A0A0A0MS04 114 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 H0YL77 283 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 ATXN7O15265 892 aaPredicted RBP15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 CD3EP07766 207 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 NMBP08949 121 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 PSMB6P28072 239 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 NCMAPQ5T1S8 102 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 Q6ZR03 302 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 C22orf34Q6ZV56 151 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 WDR86Q86TI4 376 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 PDZD9Q8IXQ8 264 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 ZNF808Q8N4W9 903 aaPredicted RBP15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 INO80EQ8NBZ0 244 aaPredicted RBP15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 CASTOR1Q8WTX7 329 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 FAAP24Q9BTP7 215 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 ZNF701Q9NV72 531 aaPredicted RBP15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 RDH8Q9NYR8 311 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 TAAR3PQ9P1P4 343 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 RCC2Q9P258 522 aaKnown RBP15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 AK3Q9UIJ7 227 aa15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 C14orf166Q9Y224 244 aaKnown RBP15.43■□□□□ 0.06
CCDC88C-203ENST00000389856 DSPP15924 2871 aaKnown RBP15.42■□□□□ 0.06
CCDC88C-203ENST00000389856 POM121CA8CG34 1229 aa15.42■□□□□ 0.06
CCDC88C-203ENST00000389856 H7C1Q1 480 aa15.42■□□□□ 0.06
CCDC88C-203ENST00000389856 AGAP20933 346 aa15.42■□□□□ 0.06
CCDC88C-203ENST00000389856 NPY4RP50391 375 aa15.42■□□□□ 0.06
CCDC88C-203ENST00000389856 ERVK11-1P61568 191 aa15.42■□□□□ 0.06
CCDC88C-203ENST00000389856 BAMBIQ13145 260 aa15.42■□□□□ 0.06
CCDC88C-203ENST00000389856 AADACL3Q5VUY0 350 aa15.42■□□□□ 0.06
CCDC88C-203ENST00000389856 RTN4RL2Q86UN3 420 aa15.42■□□□□ 0.06
CCDC88C-203ENST00000389856 OR10Z1Q8NGY1 313 aa15.42■□□□□ 0.06
CCDC88C-203ENST00000389856 PRR7Q8TB68 274 aa15.42■□□□□ 0.06
CCDC88C-203ENST00000389856 GTF3AQ92664 365 aaKnown RBP15.42■□□□□ 0.06
CCDC88C-203ENST00000389856 RBPMSQ93062 196 aaKnown RBP15.42■□□□□ 0.06
CCDC88C-203ENST00000389856 RTBDNQ9BSG5 229 aaPredicted RBP15.42■□□□□ 0.06
CCDC88C-203ENST00000389856 DECR2Q9NUI1 292 aa15.42■□□□□ 0.06
CCDC88C-203ENST00000389856 RASL12Q9NYN1 266 aa15.42■□□□□ 0.06
CCDC88C-203ENST00000389856 NUP50Q9UKX7 468 aa15.42■□□□□ 0.06
CCDC88C-203ENST00000389856 NKX2-6A6NCS4 301 aa15.41■□□□□ 0.06
CCDC88C-203ENST00000389856 I3L521 148 aa15.41■□□□□ 0.06
CCDC88C-203ENST00000389856 DEGS1O15121 323 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms