RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 HLA-DRB3P79483 266 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 PRNTQ86SH4 94 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 CBLN2Q8IUK8 224 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 HDHD3Q9BSH5 251 aaPredicted RBP12.08□□□□□ -0.48
COL4A1-201ENST00000375820 ECM29Q5VYK3 1845 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 IGKV3D-11A0A0A0MRZ8 115 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 IGKV3-11P04433 115 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 AWAT1Q58HT5 328 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 PIK3IP1Q96FE7 263 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 CACFD1Q9UGQ2 172 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 FUT9Q9Y231 359 aa12.08□□□□□ -0.48
COL4A1-201ENST00000375820 SPAARA0A1B0GVQ0 90 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 PEX11BO96011 259 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 DPPA3Q6W0C5 159 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 OR4S2Q8NH73 311 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 STARD10Q9Y365 291 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 TOGARAM1Q9Y4F4 1720 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 C9orf172C9J069 976 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 ADAM11O75078 769 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 INHBBP09529 407 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 CRISP2P16562 243 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 CLLU1Q5K131 121 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 CLEC18BQ6UXF7 455 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 TPRX1Q8N7U7 411 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 MRGPRX3Q96LB0 322 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 FRRS1LQ9P0K9 344 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 DDX60LQ5H9U9 1706 aaKnown RBP12.07□□□□□ -0.48
COL4A1-201ENST00000375820 KCNE1BA0A087WTH5 132 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 TRAV38-1A0A0B4J264 116 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 TRDCB7Z8K6 153 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 HLA-DRB5Q30154 266 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 UQCC3Q6UW78 93 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 OR6C3Q9NZP0 311 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 LPAR3Q9UBY5 353 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 DLK1P80370 383 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 SRSF10O75494 262 aaKnown RBP12.07□□□□□ -0.48
COL4A1-201ENST00000375820 IER3P46695 156 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 OR4D9Q8NGE8 314 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 P2RX4Q99571 388 aa12.07□□□□□ -0.48
COL4A1-201ENST00000375820 PAGE4O60829 102 aa12.06□□□□□ -0.48
COL4A1-201ENST00000375820 OR8I2Q8N0Y5 310 aa12.06□□□□□ -0.48
COL4A1-201ENST00000375820 IGHV3-72A0A0B4J1Y9 119 aa12.06□□□□□ -0.48
COL4A1-201ENST00000375820 PRSS54Q6PEW0 395 aa12.06□□□□□ -0.48
COL4A1-201ENST00000375820 EIF4E3Q8N5X7 224 aaKnown RBP12.06□□□□□ -0.48
COL4A1-201ENST00000375820 MAP1LC3CQ9BXW4 147 aa12.06□□□□□ -0.48
COL4A1-201ENST00000375820 CLN8Q9UBY8 286 aa12.06□□□□□ -0.48
COL4A1-201ENST00000375820 IL13RA2Q14627 380 aa12.06□□□□□ -0.48
COL4A1-201ENST00000375820 MRPL24Q96A35 216 aaKnown RBP12.06□□□□□ -0.48
COL4A1-201ENST00000375820 ZNF707Q96C28 371 aaPredicted RBP12.06□□□□□ -0.48
COL4A1-201ENST00000375820 INSIG2Q9Y5U4 225 aa12.06□□□□□ -0.48
COL4A1-201ENST00000375820 OOEPA6NGQ2 149 aa12.06□□□□□ -0.48
COL4A1-201ENST00000375820 TUBAL3A6NHL2 446 aa12.06□□□□□ -0.48
COL4A1-201ENST00000375820 CCL3P10147 92 aa12.06□□□□□ -0.48
COL4A1-201ENST00000375820 HLA-GP17693 338 aa12.06□□□□□ -0.48
COL4A1-201ENST00000375820 CADM4Q8NFZ8 388 aa12.06□□□□□ -0.48
COL4A1-201ENST00000375820 TBX15Q96SF7 602 aa12.06□□□□□ -0.48
COL4A1-201ENST00000375820 HILPDAQ9Y5L2 63 aa12.06□□□□□ -0.48
COL4A1-201ENST00000375820 LINC01387J3KSC0 135 aa12.06□□□□□ -0.48
COL4A1-201ENST00000375820 GFRA1P56159 465 aa12.06□□□□□ -0.48
COL4A1-201ENST00000375820 COL13A1Q5TAT6 717 aaPredicted RBP12.06□□□□□ -0.48
COL4A1-201ENST00000375820 C10orf113Q5VZT2 155 aa12.06□□□□□ -0.48
COL4A1-201ENST00000375820 OR4D11Q8NGI4 311 aa12.06□□□□□ -0.48
COL4A1-201ENST00000375820 OR1L1Q8NH94 360 aa12.06□□□□□ -0.48
COL4A1-201ENST00000375820 BET1LQ9NYM9 111 aa12.06□□□□□ -0.48
COL4A1-201ENST00000375820 DUXBA0A1W2PPF3 345 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 PSG2P11465 335 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 EPHA8P29322 1005 aaPredicted RBP12.05□□□□□ -0.48
COL4A1-201ENST00000375820 SRD5A2P31213 254 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 VN1R4Q7Z5H5 301 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 RASL10BQ96S79 203 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 TRBV23-1A0A0A0MS06 115 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 ANKRD20A5PA0PJZ0 165 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 M0R3E3 92 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 ZNF770Q6IQ21 691 aaPredicted RBP12.05□□□□□ -0.48
COL4A1-201ENST00000375820 EID2BQ96D98 161 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 SEC11CQ9BY50 192 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 GP1BAP07359 652 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 CXCL3P19876 107 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 SUCLG1P53597 346 aaKnown RBP12.05□□□□□ -0.48
COL4A1-201ENST00000375820 BSXQ3C1V8 233 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 DOLPP1Q86YN1 238 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 GPBAR1Q8TDU6 330 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 HARBI1Q96MB7 349 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 MYO7AQ13402 2215 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 SYNGR2O43760 224 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 CISD3P0C7P0 127 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 LYZL2Q7Z4W2 148 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 OR10G8Q8NGN5 311 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 SLC25A40Q8TBP6 338 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 NAT8Q9UHE5 227 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 CYB5R1Q9UHQ9 305 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 RNF24Q9Y225 148 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 NKX2-6A6NCS4 301 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 ATXN7O15265 892 aaPredicted RBP12.05□□□□□ -0.48
COL4A1-201ENST00000375820 KIAA0040Q15053 153 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 LDLRAD3Q86YD5 345 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 ADIPOR1Q96A54 375 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 NEURL2Q9BR09 285 aa12.05□□□□□ -0.48
COL4A1-201ENST00000375820 MS4A7Q9GZW8 240 aaPredicted RBP12.05□□□□□ -0.48
COL4A1-201ENST00000375820 IFT22Q9H7X7 185 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms