RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 HIST1H2BBP33778 126 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 HIST1H2BDP58876 126 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 HIST1H2BCP62807 126 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 HIST2H2BEQ16778 126 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.11□□□□□ -0.15
SDC4-201ENST00000372733 GFI1BQ5VTD9 330 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 GAPTQ8N292 157 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 ZNF383Q8NA42 475 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 EXTL1Q92935 676 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 HIST1H2BHQ93079 126 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 CPNE4Q96A23 557 aaPredicted RBP14.11□□□□□ -0.15
SDC4-201ENST00000372733 HIST1H2BNQ99877 126 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 HIST1H2BMQ99879 126 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 GAR1Q9NY12 217 aaKnown RBP14.11□□□□□ -0.15
SDC4-201ENST00000372733 A0A087WWC5 75 aa14.1□□□□□ -0.15
SDC4-201ENST00000372733 ZNF587BE7ETH6 402 aa14.1□□□□□ -0.15
SDC4-201ENST00000372733 CST2P09228 141 aa14.1□□□□□ -0.15
SDC4-201ENST00000372733 SRFP11831 508 aa14.1□□□□□ -0.15
SDC4-201ENST00000372733 FUT6P51993 359 aa14.1□□□□□ -0.15
SDC4-201ENST00000372733 DSCR4P56555 118 aaPredicted RBP14.1□□□□□ -0.15
SDC4-201ENST00000372733 CCL7P80098 99 aa14.1□□□□□ -0.15
SDC4-201ENST00000372733 PSG4Q00888 419 aa14.1□□□□□ -0.15
SDC4-201ENST00000372733 ZNF506Q5JVG8 444 aa14.1□□□□□ -0.15
SDC4-201ENST00000372733 AKR1C8PQ5T2L2 129 aa14.1□□□□□ -0.15
SDC4-201ENST00000372733 CLDND2Q8NHS1 167 aa14.1□□□□□ -0.15
SDC4-201ENST00000372733 INTS12Q96CB8 462 aaKnown RBP14.1□□□□□ -0.15
SDC4-201ENST00000372733 CCDC74BQ96LY2 380 aa14.1□□□□□ -0.15
SDC4-201ENST00000372733 SIGLEC12Q96PQ1 595 aa14.1□□□□□ -0.15
SDC4-201ENST00000372733 NIPSNAP3BQ9BS92 247 aa14.1□□□□□ -0.15
SDC4-201ENST00000372733 PCED1AQ9H1Q7 454 aa14.1□□□□□ -0.15
SDC4-201ENST00000372733 ZNF729A6NN14 1252 aaPredicted RBP14.1□□□□□ -0.15
SDC4-201ENST00000372733 ZNF732B4DXR9 585 aa14.1□□□□□ -0.15
SDC4-201ENST00000372733 CYB5BO43169 146 aa14.1□□□□□ -0.15
SDC4-201ENST00000372733 ZNHIT1O43257 154 aa14.1□□□□□ -0.15
SDC4-201ENST00000372733 SP5Q6BEB4 398 aaPredicted RBP14.1□□□□□ -0.15
SDC4-201ENST00000372733 SNIP1Q8TAD8 396 aaKnown RBP14.1□□□□□ -0.15
SDC4-201ENST00000372733 TVP23CQ96ET8 276 aa14.1□□□□□ -0.15
SDC4-201ENST00000372733 WNT5BQ9H1J7 359 aa14.1□□□□□ -0.15
SDC4-201ENST00000372733 CALHM2Q9HA72 323 aa14.1□□□□□ -0.15
SDC4-201ENST00000372733 PARPBPQ9NWS1 579 aa14.1□□□□□ -0.15
SDC4-201ENST00000372733 CEP192Q8TEP8 1941 aa14.09□□□□□ -0.15
SDC4-201ENST00000372733 HSPB6O14558 160 aa14.09□□□□□ -0.15
SDC4-201ENST00000372733 GATCO43716 136 aaKnown RBP14.09□□□□□ -0.15
SDC4-201ENST00000372733 HSPB1P04792 205 aaKnown RBP14.09□□□□□ -0.15
SDC4-201ENST00000372733 SCTP09683 121 aa14.09□□□□□ -0.15
SDC4-201ENST00000372733 RPL23AP62750 156 aaKnown RBP14.09□□□□□ -0.15
SDC4-201ENST00000372733 NMSQ5H8A3 153 aa14.09□□□□□ -0.15
SDC4-201ENST00000372733 FAM185AQ8N0U4 392 aa14.09□□□□□ -0.15
SDC4-201ENST00000372733 OR10D4PQ8NGN7 298 aa14.09□□□□□ -0.15
SDC4-201ENST00000372733 PLPPR1Q8TBJ4 325 aa14.09□□□□□ -0.15
SDC4-201ENST00000372733 TREM2Q9NZC2 230 aa14.09□□□□□ -0.15
SDC4-201ENST00000372733 H3BP45 60 aa14.09□□□□□ -0.15
SDC4-201ENST00000372733 TRGC2P03986 189 aa14.09□□□□□ -0.15
SDC4-201ENST00000372733 MRPL14Q6P1L8 145 aaKnown RBP14.09□□□□□ -0.15
SDC4-201ENST00000372733 CMTM1Q8IZ96 169 aa14.09□□□□□ -0.15
SDC4-201ENST00000372733 IL22RA1Q8N6P7 574 aa14.09□□□□□ -0.15
SDC4-201ENST00000372733 GNPNAT1Q96EK6 184 aaPredicted RBP14.09□□□□□ -0.15
SDC4-201ENST00000372733 KIAA1549Q9HCM3 1950 aa14.08□□□□□ -0.16
SDC4-201ENST00000372733 TNFSF12O43508 249 aa14.08□□□□□ -0.16
SDC4-201ENST00000372733 CHST1O43916 411 aa14.08□□□□□ -0.16
SDC4-201ENST00000372733 EDN3P14138 238 aa14.08□□□□□ -0.16
SDC4-201ENST00000372733 HERPUD1Q15011 391 aa14.08□□□□□ -0.16
SDC4-201ENST00000372733 ZNF600Q6ZNG1 722 aa14.08□□□□□ -0.16
SDC4-201ENST00000372733 HS3ST6Q96QI5 342 aa14.08□□□□□ -0.16
SDC4-201ENST00000372733 OR2H1Q9GZK4 316 aa14.08□□□□□ -0.16
SDC4-201ENST00000372733 OCIAD1Q9NX40 245 aa14.08□□□□□ -0.16
SDC4-201ENST00000372733 KLK3P07288 261 aaPredicted RBP14.08□□□□□ -0.16
SDC4-201ENST00000372733 SOD3P08294 240 aa14.08□□□□□ -0.16
SDC4-201ENST00000372733 KRTAP27-1Q3LI81 207 aa14.08□□□□□ -0.16
SDC4-201ENST00000372733 GPR61Q9BZJ8 451 aa14.08□□□□□ -0.16
SDC4-201ENST00000372733 FAM86C1Q9NVL1 165 aa14.08□□□□□ -0.16
SDC4-201ENST00000372733 IL36RNQ9UBH0 155 aa14.08□□□□□ -0.16
SDC4-201ENST00000372733 PTRH2Q9Y3E5 179 aaKnown RBP14.08□□□□□ -0.16
SDC4-201ENST00000372733 ZNF816-ZNF321PA0A0X1KG74 233 aa14.07□□□□□ -0.16
SDC4-201ENST00000372733 SLC22A20A6NK97 555 aa14.07□□□□□ -0.16
SDC4-201ENST00000372733 RPL36A-HNRNPH2H7BZ11 118 aa14.07□□□□□ -0.16
SDC4-201ENST00000372733 LY86O95711 162 aa14.07□□□□□ -0.16
SDC4-201ENST00000372733 TK1P04183 234 aa14.07□□□□□ -0.16
SDC4-201ENST00000372733 GLIPR1P48060 266 aa14.07□□□□□ -0.16
SDC4-201ENST00000372733 RAC1P63000 192 aa14.07□□□□□ -0.16
SDC4-201ENST00000372733 YRDCQ86U90 279 aaKnown RBP14.07□□□□□ -0.16
SDC4-201ENST00000372733 CCL28Q9NRJ3 127 aa14.07□□□□□ -0.16
SDC4-201ENST00000372733 PLSCR2Q9NRY7 297 aa14.07□□□□□ -0.16
SDC4-201ENST00000372733 A0A0G2JMM0 328 aa14.07□□□□□ -0.16
SDC4-201ENST00000372733 A0A1W2PPB8 328 aa14.07□□□□□ -0.16
SDC4-201ENST00000372733 A0A1W2PRS3 328 aa14.07□□□□□ -0.16
SDC4-201ENST00000372733 KIR3DP1A8MWS1 328 aa14.07□□□□□ -0.16
SDC4-201ENST00000372733 BCL3P20749 454 aa14.07□□□□□ -0.16
SDC4-201ENST00000372733 ID3Q02535 119 aa14.07□□□□□ -0.16
SDC4-201ENST00000372733 CEACAM16Q2WEN9 425 aa14.07□□□□□ -0.16
SDC4-201ENST00000372733 ATP5SQ99766 215 aa14.07□□□□□ -0.16
SDC4-201ENST00000372733 FOXB1Q99853 325 aa14.07□□□□□ -0.16
SDC4-201ENST00000372733 GNG13Q9P2W3 67 aa14.07□□□□□ -0.16
SDC4-201ENST00000372733 A0A0G2JRQ6 117 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 JMJD7P0C870 316 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 UCP1P25874 307 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 SSR4P51571 173 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 PAX9P55771 341 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 BAXQ07812 192 aa14.06□□□□□ -0.16
SDC4-201ENST00000372733 TMEM267Q0VDI3 215 aaPredicted RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms