RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 DEGS1O15121 323 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 SIGLEC5O15389 551 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 SSX5O60225 188 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 KNG1P01042 644 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 CD3GP09693 182 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 RPS2P15880 293 aaKnown RBP3.32□□□□□ -1.88
LIG4-201ENST00000356922 CCL3L1P16619 93 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 BLVRBP30043 206 aaPredicted RBP3.32□□□□□ -1.88
LIG4-201ENST00000356922 TNFSF8P32971 234 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 GDNFP39905 211 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 MDH2P40926 338 aaKnown RBP3.32□□□□□ -1.88
LIG4-201ENST00000356922 INPP1P49441 399 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 EDDM3AQ14507 147 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 ZNF273Q14593 569 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 C6orf183Q5T699 404 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 WDR25Q64LD2 544 aaPredicted RBP3.32□□□□□ -1.88
LIG4-201ENST00000356922 RAB12Q6IQ22 244 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 GVQW1Q8N7I0 195 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 KCNG3Q8TAE7 436 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 PPP1R35Q8TAP8 253 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 CCDC107Q8WV48 283 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 FOXRED1Q96CU9 486 aaPredicted RBP3.32□□□□□ -1.88
LIG4-201ENST00000356922 NEDD4LQ96PU5 975 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 TM2D1Q9BX74 207 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 CST11Q9H112 138 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 ATG5Q9H1Y0 275 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 ZNF665Q9H7R5 613 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 PATZ1Q9HBE1 687 aaKnown RBP3.32□□□□□ -1.88
LIG4-201ENST00000356922 RCC2Q9P258 522 aaKnown RBP3.32□□□□□ -1.88
LIG4-201ENST00000356922 TRAV38-1A0A0B4J264 116 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 A0A0G2JMP0 313 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 A0A0X1KG70 313 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 A0A1W2PQ09 198 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 METTL21EPA6NDL7 271 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 F5H0A9 414 aaPredicted RBP3.32□□□□□ -1.88
LIG4-201ENST00000356922 ZNF701M0R085 212 aaPredicted RBP3.32□□□□□ -1.88
LIG4-201ENST00000356922 LANCL1O43813 399 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 GSTT2P0CG29 244 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 GSTT2BP0CG30 244 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 S100A5P33763 92 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 TALDO1P37837 337 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 DCTN2Q13561 401 aaKnown RBP3.32□□□□□ -1.88
LIG4-201ENST00000356922 SMIM21Q3B7S5 101 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 NHLRC3Q5JS37 347 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 METTL11BQ5VVY1 283 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 TMEM200BQ69YZ2 307 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 BTN2A1Q7KYR7 527 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 OR4M2Q8NGB6 313 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 OR4K15Q8NH41 348 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 RFESDQ8TAC1 157 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 ST8SIA4Q92187 359 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 URM1Q9BTM9 101 aaKnown RBP3.32□□□□□ -1.88
LIG4-201ENST00000356922 KAAG1Q9UBP8 84 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 COL6A5A8TX70 2615 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 PKD1L1Q8TDX9 2849 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 FAM172BPA6NC97 362 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 CLPXO76031 633 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 USF1P22415 310 aaPredicted RBP3.32□□□□□ -1.88
LIG4-201ENST00000356922 MNDAP41218 407 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 PITPNBP48739 271 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 LSAMPQ13449 338 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 ARFRP1Q13795 201 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 ZNF79Q15937 498 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 TMEM249Q2WGJ8 235 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 ZNF260Q3ZCT1 412 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 CDNFQ49AH0 187 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 ESCO2Q56NI9 601 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 LDLRAD2Q5SZI1 272 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 RSBN1Q5VWQ0 802 aaPredicted RBP3.32□□□□□ -1.88
LIG4-201ENST00000356922 MZT2AQ6P582 158 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 PRSS57Q6UWY2 283 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 GDPD3Q7L5L3 318 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 SLC36A1Q7Z2H8 476 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 PDZD9Q8IXQ8 264 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 PRR18Q8N4B5 295 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 Q8N7P7 452 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 OR13A1Q8NGR1 328 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 NUDCD2Q8WVJ2 157 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 SDHCQ99643 169 aaPredicted RBP3.32□□□□□ -1.88
LIG4-201ENST00000356922 SOSTQ9BQB4 213 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 DPCDQ9BVM2 203 aaPredicted RBP3.32□□□□□ -1.88
LIG4-201ENST00000356922 PECRQ9BY49 303 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 PARP12Q9H0J9 701 aaKnown RBP3.32□□□□□ -1.88
LIG4-201ENST00000356922 RASL12Q9NYN1 266 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 NDUFA13Q9P0J0 144 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 AK3Q9UIJ7 227 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 RAB22AQ9UL26 194 aa3.32□□□□□ -1.88
LIG4-201ENST00000356922 TRAV18A0A075B6X5 111 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 MFNGO00587 321 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 NDUFB3O43676 98 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 MT-ND4P03905 459 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 CGB3P0DN86 165 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 CGB7P0DN87 165 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 IGHV4-31P0DP07 118 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 SSTR5P35346 364 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 GPR176Q14439 515 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 GRK1Q15835 563 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 TUSC1Q2TAM9 212 aa3.31□□□□□ -1.88
LIG4-201ENST00000356922 FAHD2BQ6P2I3 314 aaPredicted RBP3.31□□□□□ -1.88
LIG4-201ENST00000356922 Q6ZTK2 550 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms