RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 IGKV1D-17A0A075B6S4 117 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 IGHV3-43A0A0B4J1X8 118 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 TRIM77I1YAP6 450 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 IGHV3-43DP0DP04 118 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 TMEM50BP56557 158 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 RPS27AP62979 156 aaKnown RBP7.71□□□□□ -1.18
USP4-202ENST00000351842 LCN2P80188 198 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 MZT1Q08AG7 82 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 IL24Q13007 206 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 TESK1Q15569 626 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 ZBTB37Q5TC79 503 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 C1orf174Q8IYL3 243 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 C1orf87Q8N0U7 546 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 Q8N402 240 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 SUMF2Q8NBJ7 301 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 LEAP2Q969E1 77 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 NOP16Q9Y3C1 178 aaKnown RBP7.71□□□□□ -1.18
USP4-202ENST00000351842 IGHV4-30-2A0A087WSY4 118 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 OOEPA6NGQ2 149 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 TMEM210A6NLX4 147 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 TMEM178BH3BS89 294 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 RAB27BO00194 218 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 SDCBPO00560 298 aaPredicted RBP7.71□□□□□ -1.18
USP4-202ENST00000351842 BET1O15155 118 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 LANCL1O43813 399 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 CD200P41217 278 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 GLIPR1P48060 266 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 EVX1P49640 407 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 FGF12P61328 243 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 BTG1P62324 171 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 C11orf71Q6IPW1 123 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 CLEC2AQ6UVW9 174 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 ZNF782Q6ZMW2 699 aaPredicted RBP7.71□□□□□ -1.18
USP4-202ENST00000351842 FAM185AQ8N0U4 392 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 OR10R2Q8NGX6 335 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 OR52I2Q8NH67 350 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 MRGPRDQ8TDS7 321 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 TIMD4Q96H15 378 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 CITED4Q96RK1 184 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 CMSS1Q9BQ75 279 aaKnown RBP7.71□□□□□ -1.18
USP4-202ENST00000351842 TMEM246Q9BRR3 403 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 TMPRSS13Q9BYE2 586 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 C11orf54Q9H0W9 315 aaPredicted RBP7.71□□□□□ -1.18
USP4-202ENST00000351842 KIF25Q9UIL4 384 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 ADAM30Q9UKF2 790 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 MAB21L2Q9Y586 359 aa7.71□□□□□ -1.18
USP4-202ENST00000351842 MCRIP1C9JLW8 97 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 M0QYG6 137 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 SH2D1BO14796 132 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 TUBG1P23258 451 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 NFYBP25208 207 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 PAX6P26367 422 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 EFNA4P52798 201 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 RAB25P57735 213 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 SHEQ5VZ18 495 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 LRRC28Q86X40 367 aaPredicted RBP7.7□□□□□ -1.18
USP4-202ENST00000351842 CCDC54Q8NEL0 328 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 FAM168AQ92567 244 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 SLA2Q9H6Q3 261 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 IFT46Q9NQC8 304 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 TUBG2Q9NRH3 451 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 AK3Q9UIJ7 227 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 TRAPPC2LQ9UL33 140 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 IGHV3OR16-10A0A075B7F0 116 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 TMEM14DPA8MWL7 114 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 SRRM5B3KS81 715 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 RNF223E7ERA6 249 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 ZNF780AO75290 641 aaPredicted RBP7.7□□□□□ -1.18
USP4-202ENST00000351842 ALDOBP05062 364 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 ATF4P18848 351 aaPredicted RBP7.7□□□□□ -1.18
USP4-202ENST00000351842 AMY2BP19961 511 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 SSTR2P30874 369 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 PCGF3Q3KNV8 242 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 FAM76BQ5HYJ3 339 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 TRIQKQ629K1 86 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 FAM166AQ6J272 317 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 Q71RC1 249 aaPredicted RBP7.7□□□□□ -1.18
USP4-202ENST00000351842 OR56B1Q8NGI3 324 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 IGFBPL1Q8WX77 278 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 ACOT12Q8WYK0 555 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 Q96M66 194 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 DPCDQ9BVM2 203 aaPredicted RBP7.7□□□□□ -1.18
USP4-202ENST00000351842 BEX2Q9BXY8 128 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 BEX1Q9HBH7 125 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 NPTNQ9Y639 398 aa7.7□□□□□ -1.18
USP4-202ENST00000351842 TRAV24A0A0B4J272 114 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 A0A1W2PPE3 182 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 CEACAM18A8MTB9 384 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 BTF3P20290 206 aaKnown RBP7.69□□□□□ -1.18
USP4-202ENST00000351842 DNASE1P24855 282 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 PTH2RP49190 550 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 SCGB2B2Q4G0G5 96 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 RSBN1Q5VWQ0 802 aaPredicted RBP7.69□□□□□ -1.18
USP4-202ENST00000351842 C20orf204Q6ZNR8 217 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 DTX2Q86UW9 622 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 ZSCAN4Q8NAM6 433 aaPredicted RBP7.69□□□□□ -1.18
USP4-202ENST00000351842 POC1AQ8NBT0 407 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 MARVELD1Q9BSK0 173 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 HSPA12AO43301 675 aa7.69□□□□□ -1.18
USP4-202ENST00000351842 IL2RGP31785 369 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms