RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 SEMA5BQ9P283 1151 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 PIGLQ9Y2B2 252 aa5.87□□□□□ -1.47
VPS39-202ENST00000348544 MRPS18CQ9Y3D5 142 aaKnown RBP5.87□□□□□ -1.47
VPS39-202ENST00000348544 F5P12259 2224 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 TDRD6O60522 2096 aaKnown RBP5.86□□□□□ -1.47
VPS39-202ENST00000348544 DOCK8Q8NF50 2099 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 TNFSF12-TNFSF13A0A0A6YY99 330 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 TOX3O15405 576 aaPredicted RBP5.86□□□□□ -1.47
VPS39-202ENST00000348544 TNFSF12O43508 249 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 FOSL2P15408 326 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 NTSR1P30989 418 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 CTHP32929 405 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 UCP3P55916 312 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 VAMP2P63027 116 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 ID3Q02535 119 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 RTP5Q14D33 572 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 ADIRFQ15847 76 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 IQCJQ1A5X6 159 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 RSPO1Q2MKA7 263 aaPredicted RBP5.86□□□□□ -1.47
VPS39-202ENST00000348544 PIGYQ3MUY2 71 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 C1orf194Q5T5A4 169 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 PRSS58Q8IYP2 241 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 IL22RA1Q8N6P7 574 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 TMEM37Q8WXS4 190 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 TMEM234Q8WY98 164 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 ST8SIA1Q92185 356 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 NAT6Q93015 286 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 TMEM56Q96MV1 263 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 PCGF1Q9BSM1 259 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 ALKBH4Q9NXW9 302 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 MYOTQ9UBF9 498 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 CBY1Q9Y3M2 126 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 TMEM56-RWDD3S4R434 201 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 CHD3Q12873 2000 aaKnown RBP5.86□□□□□ -1.47
VPS39-202ENST00000348544 A0A1B0GUS0 222 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 ANKUB1A6NFN9 424 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 CEBPZOSA8MTT3 80 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 B4DGG1 531 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 F5H5K5 113 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 H3BP45 60 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 CHST1O43916 411 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 IGHG1P01857 330 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 METTL15P1P0C7V9 234 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 GNRHRP30968 328 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 PRSS12P56730 875 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 CLDN17P56750 224 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 FOXL2P58012 376 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 GRB2P62993 217 aaKnown RBP5.86□□□□□ -1.47
VPS39-202ENST00000348544 MRPS11P82912 194 aaKnown RBP5.86□□□□□ -1.47
VPS39-202ENST00000348544 TLE1Q04724 770 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 BAXQ07812 192 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 MYBPHQ13203 477 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 PDCD1Q15116 288 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 ANKRD39Q53RE8 183 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 NMSQ5H8A3 153 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 ACTL10Q5JWF8 245 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 C1orf189Q5VU69 101 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 ZNF774Q6NX45 483 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 LRP11Q86VZ4 500 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 TGIF2LYQ8IUE0 185 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 UEVLDQ8IX04 471 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 MRPL41Q8IXM3 137 aaKnown RBP5.86□□□□□ -1.47
VPS39-202ENST00000348544 FAM185AQ8N0U4 392 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 PP6455Q8WZ26 134 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 TMEM18Q96B42 140 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 ACY3Q96HD9 319 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 GABRG3Q99928 467 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 FUT9Q9Y231 359 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 RNF115Q9Y4L5 304 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 MED12Q93074 2177 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 SPEGQ15772 3267 aa5.86□□□□□ -1.47
VPS39-202ENST00000348544 SPAG17Q6Q759 2223 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 IGHV5-51A0A0C4DH38 117 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 A0A0U1RQV5 110 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 PPYP01298 95 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 TNFP01375 233 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 POU2F2P09086 479 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 HOXB2P14652 356 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 CTSSP25774 331 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 GALR1P47211 349 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 RPL29P47914 159 aaKnown RBP5.85□□□□□ -1.47
VPS39-202ENST00000348544 GFERP55789 205 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 MTCP1P56278 107 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 FBXW4P57775 412 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 GAGE1Q13065 139 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 KCNMB1Q16558 191 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 CENPVQ7Z7K6 275 aaPredicted RBP5.85□□□□□ -1.47
VPS39-202ENST00000348544 TBC1D26Q86UD7 250 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 ZNF695Q8IW36 515 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 GBGT1Q8N5D6 347 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 CCDC71LQ8N9Z2 235 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 OR1N1Q8NGS0 311 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 OR2V1Q8NHB1 315 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 MBD3L1Q8WWY6 194 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 DDIT4LQ96D03 193 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 CAPNS2Q96L46 248 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 DIRC2Q96SL1 478 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 RBKSQ9H477 322 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 ZNF160Q9HCG1 818 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 TAAR3PQ9P1P4 343 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms