RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 MRAPQ8TCY5 172 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 OR6C1Q96RD1 312 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 FAM103A1Q9BTL3 118 aaKnown RBP3.63□□□□□ -1.83
NEDD4-201ENST00000338963 RSPO3Q9BXY4 272 aaPredicted RBP3.63□□□□□ -1.83
NEDD4-201ENST00000338963 FRRS1LQ9P0K9 344 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 ZNF780BQ9Y6R6 833 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 HIST1H1TP22492 207 aaPredicted RBP3.63□□□□□ -1.83
NEDD4-201ENST00000338963 GPR183P32249 361 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 EWSR1Q01844 656 aaKnown RBP eCLIP3.63□□□□□ -1.83
NEDD4-201ENST00000338963 DMWDQ09019 674 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 EIF3IQ13347 325 aaKnown RBP3.63□□□□□ -1.83
NEDD4-201ENST00000338963 MFAP5Q13361 173 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 NFATC4Q14934 902 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 COX20Q5RI15 118 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 RFLNAQ6ZTI6 216 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 TMEM123Q8N131 208 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 TMEM251Q8N6I4 163 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 CHST13Q8NET6 341 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 GTSF1LQ9H1H1 148 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 USP21Q9UK80 565 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 PLAGL1Q9UM63 463 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 LY96Q9Y6Y9 160 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 PPIAL4CA0A0B4J2A2 164 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 TMEM8BA6NDV4 472 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 CCL22O00626 93 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 PIN1P1O15428 100 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 PPIAL4GP0DN37 164 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 SPSB3Q6PJ21 355 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 OR2C3Q8N628 320 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 TEX29Q8N6K0 151 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 ZIC4Q8N9L1 334 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 OR4A16Q8NH70 328 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 UHRF2Q96PU4 802 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 RTN4RQ9BZR6 473 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 WDR61Q9GZS3 305 aaKnown RBP3.63□□□□□ -1.83
NEDD4-201ENST00000338963 UBE2ZQ9H832 354 aaPredicted RBP3.63□□□□□ -1.83
NEDD4-201ENST00000338963 GNG13Q9P2W3 67 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 SS18L2Q9UHA2 77 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 ICAM5Q9UMF0 924 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 TIMM9Q9Y5J7 89 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 SOX21Q9Y651 276 aaPredicted RBP3.63□□□□□ -1.83
NEDD4-201ENST00000338963 A4D1N5 150 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 H0Y980 276 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 ETHE1O95571 254 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 PSEN2P49810 448 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 DUSP3P51452 185 aaPredicted RBP3.62□□□□□ -1.83
NEDD4-201ENST00000338963 GUCA2AQ02747 115 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 RPEL1Q2QD12 228 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 TIMM23BQ5SRD1 257 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 OR2M3Q8NG83 312 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 NPFFR1Q9GZQ6 430 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 IL36GQ9NZH8 169 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 ISLRO14498 428 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 DNPH1O43598 174 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 APBA3O96018 575 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 HBG1P69891 147 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 HBG2P69892 147 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 MEP1BQ16820 701 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 GAB4Q2WGN9 574 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 WIPI1Q5MNZ9 446 aaPredicted RBP3.62□□□□□ -1.83
NEDD4-201ENST00000338963 ZFAND6Q6FIF0 208 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 NEGR1Q7Z3B1 354 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 OR5AR1Q8NGP9 310 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 OR4C3Q8NH37 302 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 KISS1RQ969F8 398 aaPredicted RBP3.62□□□□□ -1.83
NEDD4-201ENST00000338963 PLD4Q96BZ4 506 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 RCL1Q9Y2P8 373 aaKnown RBP3.62□□□□□ -1.83
NEDD4-201ENST00000338963 SHANK3Q9BYB0 1731 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 ATAD5Q96QE3 1844 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 KIR2DS1A0A191URI9 304 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 FCN1O00602 326 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 CDC42EP2O14613 210 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 SIVA1O15304 175 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 SERF1AO75920 110 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 RENP00797 406 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 KIR2DS1Q14954 304 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 GLYATL3Q5SZD4 288 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 BVES-AS1Q5T3Y7 98 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 ZNF788Q6ZQV5 615 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 AMZ2Q86W34 360 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 TP53INP2Q8IXH6 220 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 NPEPL1Q8NDH3 523 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 ST6GALNAC3Q8NDV1 305 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 OR1L3Q8NH93 324 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 ZNF502Q8TBZ5 544 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 ZNRF4Q8WWF5 429 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 RNF39Q9H2S5 420 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 UBTD1Q9HAC8 227 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 KCNIP2Q9NS61 270 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 SLC39A9Q9NUM3 307 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 COA3Q9Y2R0 106 aaPredicted RBP3.62□□□□□ -1.83
NEDD4-201ENST00000338963 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.62□□□□□ -1.83
NEDD4-201ENST00000338963 OR2T8A6NH00 312 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 SLC38A8A6NNN8 435 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 LILRA1O75019 489 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 HSBP1O75506 76 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 OR5AL1P0C617 328 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 PTGER1P34995 402 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 CA7P43166 264 aa3.62□□□□□ -1.83
NEDD4-201ENST00000338963 SNU13P55769 128 aaKnown RBP3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms