RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 SIGIRRQ6IA17 410 aa13.82□□□□□ -0.2
PDLIM1-201ENST00000329399 BPIFB2Q8N4F0 458 aa13.82□□□□□ -0.2
PDLIM1-201ENST00000329399 SCCPDHQ8NBX0 429 aa13.82□□□□□ -0.2
PDLIM1-201ENST00000329399 OR10AD1Q8NGE0 317 aa13.82□□□□□ -0.2
PDLIM1-201ENST00000329399 OR10Z1Q8NGY1 313 aa13.82□□□□□ -0.2
PDLIM1-201ENST00000329399 CCDC107Q8WV48 283 aa13.82□□□□□ -0.2
PDLIM1-201ENST00000329399 FAM168AQ92567 244 aa13.82□□□□□ -0.2
PDLIM1-201ENST00000329399 CMSS1Q9BQ75 279 aaKnown RBP13.82□□□□□ -0.2
PDLIM1-201ENST00000329399 RASL12Q9NYN1 266 aa13.82□□□□□ -0.2
PDLIM1-201ENST00000329399 ZDHHC8Q9ULC8 765 aa13.82□□□□□ -0.2
PDLIM1-201ENST00000329399 CUBNO60494 3623 aa13.82□□□□□ -0.2
PDLIM1-201ENST00000329399 VWC2LB2RUY7 222 aa13.81□□□□□ -0.2
PDLIM1-201ENST00000329399 OR7C1O76099 320 aaPredicted RBP13.81□□□□□ -0.2
PDLIM1-201ENST00000329399 AMY2AP04746 511 aa13.81□□□□□ -0.2
PDLIM1-201ENST00000329399 FCER2P06734 321 aa13.81□□□□□ -0.2
PDLIM1-201ENST00000329399 HNRNPCP07910 306 aaKnown RBP eCLIP13.81□□□□□ -0.2
PDLIM1-201ENST00000329399 PGA5P0DJD9 388 aa13.81□□□□□ -0.2
PDLIM1-201ENST00000329399 DAOP14920 347 aa13.81□□□□□ -0.2
PDLIM1-201ENST00000329399 NPBWR2P48146 333 aa13.81□□□□□ -0.2
PDLIM1-201ENST00000329399 ZNF154Q13106 437 aa13.81□□□□□ -0.2
PDLIM1-201ENST00000329399 CARTPTQ16568 116 aa13.81□□□□□ -0.2
PDLIM1-201ENST00000329399 CLEC2AQ6UVW9 174 aa13.81□□□□□ -0.2
PDLIM1-201ENST00000329399 CLEC9AQ6UXN8 241 aa13.81□□□□□ -0.2
PDLIM1-201ENST00000329399 Q6ZS49 121 aa13.81□□□□□ -0.2
PDLIM1-201ENST00000329399 C6orf201Q7Z4U5 140 aa13.81□□□□□ -0.2
PDLIM1-201ENST00000329399 ZDHHC22Q8N966 263 aa13.81□□□□□ -0.2
PDLIM1-201ENST00000329399 POC1AQ8NBT0 407 aa13.81□□□□□ -0.2
PDLIM1-201ENST00000329399 OR51S1Q8NGJ8 323 aa13.81□□□□□ -0.2
PDLIM1-201ENST00000329399 ERGIC1Q969X5 290 aa13.81□□□□□ -0.2
PDLIM1-201ENST00000329399 NRIP2Q9BQI9 281 aa13.81□□□□□ -0.2
PDLIM1-201ENST00000329399 RAB1BQ9H0U4 201 aa13.81□□□□□ -0.2
PDLIM1-201ENST00000329399 TREM2Q9NZC2 230 aa13.81□□□□□ -0.2
PDLIM1-201ENST00000329399 ALG5Q9Y673 324 aa13.81□□□□□ -0.2
PDLIM1-201ENST00000329399 MEIS3P1A6NDR6 274 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 SNRPGP15A8MWD9 76 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 MCRIP1C9JLW8 97 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 SYNGR1O43759 233 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 AMY2BP19961 511 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 TNFSF4P23510 183 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 MDH2P40926 338 aaKnown RBP13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 OR3A3P47888 321 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 ZNF146Q15072 292 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 PIGYQ3MUY2 71 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 NKAPLQ5M9Q1 402 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 FAM90A1Q86YD7 464 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 BEST4Q8NFU0 473 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 OR5AP2Q8NGF4 316 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 OR5H2Q8NGV7 314 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 GINS4Q9BRT9 223 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 C12orf4Q9NQ89 552 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 ELF5Q9UKW6 265 aaPredicted RBP13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 MGAT4AQ9UM21 535 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 TRAV6A0A075B6T7 132 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 MLNRO43193 412 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 ZNF735P0CB33 412 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 PRKACAP17612 351 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 SNU13P55769 128 aaKnown RBP13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 CCL8P80075 99 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 NKPD1Q17RQ9 610 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 CHRFAM7AQ494W8 412 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 CD276Q5ZPR3 534 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 IDO2Q6ZQW0 420 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 SNAPC3Q92966 411 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 FAAP24Q9BTP7 215 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 GHITMQ9H3K2 345 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 HES4Q9HCC6 221 aa13.8□□□□□ -0.2
PDLIM1-201ENST00000329399 TRBV6-6A0A0A6YYG2 114 aa13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 IGHV4-61A0A0C4DH41 118 aa13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 ZSCAN5BA6NJL1 495 aa13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 CEACAM18A8MTB9 384 aa13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 C17orf100A8MU93 164 aa13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 SH2D1BO14796 132 aa13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 CCNKO75909 580 aa13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 ADH4P08319 380 aa13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 HRH1P35367 487 aa13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 PDLIM4P50479 330 aa13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 RRAS2P62070 204 aaPredicted RBP13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 SURF2Q15527 256 aaPredicted RBP13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 FAHD2BQ6P2I3 314 aaPredicted RBP13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 Q6ZR03 302 aa13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 GLCCI1Q86VQ1 547 aa13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 GVQW1Q8N7I0 195 aa13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 NEU4Q8WWR8 484 aaPredicted RBP13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 DVL3Q92997 716 aaPredicted RBP13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 FAHD2AQ96GK7 314 aa13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 SULT4A1Q9BR01 284 aa13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 ST6GALNAC5Q9BVH7 336 aa13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 TINAGL1Q9GZM7 467 aaPredicted RBP13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 MS4A5Q9H3V2 200 aa13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 ZNF286AQ9HBT8 521 aa13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 MSL2Q9HCI7 577 aa13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 AK3Q9UIJ7 227 aa13.79□□□□□ -0.2
PDLIM1-201ENST00000329399 MALRD1Q5VYJ5 2156 aa13.78□□□□□ -0.2
PDLIM1-201ENST00000329399 MXRA5Q9NR99 2828 aa13.78□□□□□ -0.2
PDLIM1-201ENST00000329399 IFNL4K9M1U5 179 aa13.78□□□□□ -0.2
PDLIM1-201ENST00000329399 CDIPTO14735 213 aa13.78□□□□□ -0.2
PDLIM1-201ENST00000329399 NXPH2O95156 264 aa13.78□□□□□ -0.2
PDLIM1-201ENST00000329399 GATA4P43694 442 aa13.78□□□□□ -0.2
PDLIM1-201ENST00000329399 KCNJ3P48549 501 aa13.78□□□□□ -0.2
PDLIM1-201ENST00000329399 DSCR9P59020 149 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms