RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 RGS7BPQ6MZT1 257 aaPredicted RBP12.71□□□□□ -0.37
COL7A1-201ENST00000328333 SPACA5Q96QH8 159 aa12.71□□□□□ -0.37
COL7A1-201ENST00000328333 TNRC6AQ8NDV7 1962 aaKnown RBP12.71□□□□□ -0.37
COL7A1-201ENST00000328333 UPK1AO00322 258 aa12.71□□□□□ -0.37
COL7A1-201ENST00000328333 SYNGR2O43760 224 aa12.71□□□□□ -0.37
COL7A1-201ENST00000328333 GPR3P46089 330 aa12.71□□□□□ -0.37
COL7A1-201ENST00000328333 HMGA2P52926 109 aa12.71□□□□□ -0.37
COL7A1-201ENST00000328333 FAM27D1Q5T7N8 215 aa12.71□□□□□ -0.37
COL7A1-201ENST00000328333 ZG16BQ96DA0 208 aa12.71□□□□□ -0.37
COL7A1-201ENST00000328333 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.71□□□□□ -0.38
COL7A1-201ENST00000328333 OR2D2Q9H210 308 aa12.71□□□□□ -0.38
COL7A1-201ENST00000328333 IL19Q9UHD0 177 aa12.71□□□□□ -0.38
COL7A1-201ENST00000328333 AESQ08117 197 aa12.71□□□□□ -0.38
COL7A1-201ENST00000328333 NFAM1Q8NET5 270 aaPredicted RBP12.71□□□□□ -0.38
COL7A1-201ENST00000328333 DSPPQ9NZW4 1301 aa12.71□□□□□ -0.38
COL7A1-201ENST00000328333 PRRG2O14669 202 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 SPPL3Q8TCT6 385 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 ADAMTS17Q8TE56 1095 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 SRSF10O75494 262 aaKnown RBP12.7□□□□□ -0.38
COL7A1-201ENST00000328333 JAG1P78504 1218 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 MBD3L1Q8WWY6 194 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 OOEPA6NGQ2 149 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 SPANXA1Q9NS26 97 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 C1orf174Q8IYL3 243 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 OR13G1Q8NGZ3 307 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 GPA33Q99795 319 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 WIPI2Q9Y4P8 454 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 ADAP1O75689 374 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 KIR3DL2P43630 455 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 TWIST1Q15672 202 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 TOX2Q96NM4 488 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 BTLAQ7Z6A9 289 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 KISS1RQ969F8 398 aaPredicted RBP12.7□□□□□ -0.38
COL7A1-201ENST00000328333 MED13Q9UHV7 2174 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 EPPINO95925 133 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 FOLR2P14207 255 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 CD27P26842 260 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 MRPL43Q8N983 215 aaKnown RBP12.7□□□□□ -0.38
COL7A1-201ENST00000328333 OR10V1Q8NGI7 309 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 hADV38S2A0JD32 116 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 GJB3O75712 270 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 ARG1P05089 322 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 FNDC7Q5VTL7 733 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 OR1B1Q8NGR6 318 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 SGMS2Q8NHU3 365 aa12.7□□□□□ -0.38
COL7A1-201ENST00000328333 DNAL4O96015 105 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 B3GALT4O96024 378 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 FGF8P55075 233 aaPredicted RBP12.69□□□□□ -0.38
COL7A1-201ENST00000328333 GABRA6Q16445 453 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 TMEM211Q6ICI0 200 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 TBC1D26Q86UD7 250 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 HSPB1P04792 205 aaKnown RBP12.69□□□□□ -0.38
COL7A1-201ENST00000328333 V9GYH0 126 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 SNURFLB1AK76 121 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 EDN3P14138 238 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 INSM1Q01101 510 aaPredicted RBP12.69□□□□□ -0.38
COL7A1-201ENST00000328333 ZNF770Q6IQ21 691 aaPredicted RBP12.69□□□□□ -0.38
COL7A1-201ENST00000328333 GABRG3Q99928 467 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 LOC102724200A0A096LPH7 203 aaPredicted RBP12.69□□□□□ -0.38
COL7A1-201ENST00000328333 FGF17O60258 216 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 PRR35P0CG20 571 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 ISXQ2M1V0 245 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 ABHD1Q96SE0 405 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 SH2D5Q6ZV89 423 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 MISP3Q96FF7 219 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 GAMTQ14353 236 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 ZNF141Q15928 474 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 FAM78AQ5JUQ0 283 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 RASL11BQ9BPW5 248 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 THAP10Q9P2Z0 257 aaPredicted RBP12.69□□□□□ -0.38
COL7A1-201ENST00000328333 DHRS7CA6NNS2 312 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 WNT3P56703 355 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 CA13Q8N1Q1 262 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 DIRC2Q96SL1 478 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 LPAR5Q9H1C0 372 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 PSG11Q9UQ72 335 aa12.69□□□□□ -0.38
COL7A1-201ENST00000328333 PRSS36Q5K4E3 855 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 TGIF2LXQ8IUE1 241 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 SLC37A2Q8TED4 501 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 TNCP24821 2201 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 IER3P46695 156 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 MYBPHQ13203 477 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 ASCL5Q7RTU5 278 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 C4orf45Q96LM5 186 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 TEPPQ6URK8 271 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 C6orf15Q6UXA7 325 aaPredicted RBP12.68□□□□□ -0.38
COL7A1-201ENST00000328333 GBGT1Q8N5D6 347 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 OR1N1Q8NGS0 311 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 CES1P1Q9UKY3 287 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 HFEQ30201 348 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 HCFC1R1Q9NWW0 138 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 SPG11Q96JI7 2443 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 C7orf66A4D0T2 115 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 K7ESF4 209 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 CCR5P51681 352 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 LIMK1P53667 647 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 PAPPA-AS1Q5QFB9 102 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 TUSC5Q8IXB3 177 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 FAM169BQ8N8A8 192 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 ZNF775Q96BV0 537 aaPredicted RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms