RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 GPR157Q5UAW9 335 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 C5orf24Q7Z6I8 188 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 LGI3Q8N145 548 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 SLC35G3Q8N808 338 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 C15orf54Q8N8G6 183 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 HSD17B11Q8NBQ5 300 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 OR2M7Q8NG81 312 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 OR56B2PQ8NGI1 322 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 SYT3Q9BQG1 590 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 RSRP1Q9BUV0 290 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 PAPOLGQ9BWT3 736 aaKnown RBP13.81□□□□□ -0.2
USHBP1-202ENST00000324554 LINC00470Q9BZP3 86 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 RCL1Q9Y2P8 373 aaKnown RBP13.81□□□□□ -0.2
USHBP1-202ENST00000324554 FRYQ5TBA9 3013 aa13.81□□□□□ -0.2
USHBP1-202ENST00000324554 FREM1Q5H8C1 2179 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 A0A096LPE4 126 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 A0A1W2PPZ6 126 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 LINC01387J3KSC0 135 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 ST8SIA3O43173 380 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 ZNHIT1O43257 154 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 CCNOP22674 350 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 PMELP40967 661 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 CAMLGP49069 296 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 IGSF11Q5DX21 431 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 MEX3BQ6ZN04 569 aaKnown RBP13.8□□□□□ -0.2
USHBP1-202ENST00000324554 Q8NFD4 153 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 FAM173AQ9BQD7 235 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 C20orf24Q9BUV8 137 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 REPIN1Q9BWE0 567 aaKnown RBP13.8□□□□□ -0.2
USHBP1-202ENST00000324554 C19orf12Q9NSK7 152 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 LUZP4Q9P127 313 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 SNRNP70P08621 437 aaKnown RBP13.8□□□□□ -0.2
USHBP1-202ENST00000324554 CCL2P13500 99 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 DAOP14920 347 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 MEOX2P50222 304 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 CLDN18P56856 261 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 SNRPEP62304 92 aaKnown RBP13.8□□□□□ -0.2
USHBP1-202ENST00000324554 IL13RA2Q14627 380 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 TUSC5Q8IXB3 177 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 ISOC2Q96AB3 205 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 EIF5A2Q9GZV4 153 aaKnown RBP13.8□□□□□ -0.2
USHBP1-202ENST00000324554 FGF23Q9GZV9 251 aaPredicted RBP13.8□□□□□ -0.2
USHBP1-202ENST00000324554 SPACA1Q9HBV2 294 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 CRIM1Q9NZV1 1036 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 RFNGQ9Y644 331 aa13.8□□□□□ -0.2
USHBP1-202ENST00000324554 CUL9Q8IWT3 2517 aa13.79□□□□□ -0.2
USHBP1-202ENST00000324554 SPTBN2O15020 2390 aa13.79□□□□□ -0.2
USHBP1-202ENST00000324554 C7orf77A4D0Y5 90 aa13.79□□□□□ -0.2
USHBP1-202ENST00000324554 PPYP01298 95 aa13.79□□□□□ -0.2
USHBP1-202ENST00000324554 HLA-HP01893 362 aa13.79□□□□□ -0.2
USHBP1-202ENST00000324554 BCL3P20749 454 aa13.79□□□□□ -0.2
USHBP1-202ENST00000324554 LMO1P25800 156 aa13.79□□□□□ -0.2
USHBP1-202ENST00000324554 FOXG1P55316 489 aaPredicted RBP13.79□□□□□ -0.2
USHBP1-202ENST00000324554 HERV-K104P61576 105 aa13.79□□□□□ -0.2
USHBP1-202ENST00000324554 OR4D5Q8NGN0 318 aa13.79□□□□□ -0.2
USHBP1-202ENST00000324554 LRFN3Q9BTN0 628 aa13.79□□□□□ -0.2
USHBP1-202ENST00000324554 A0A1B0GV50 99 aa13.79□□□□□ -0.2
USHBP1-202ENST00000324554 ZNF503-AS2A6NEH8 195 aa13.79□□□□□ -0.2
USHBP1-202ENST00000324554 EIF3GO75821 320 aaKnown RBP eCLIP13.79□□□□□ -0.2
USHBP1-202ENST00000324554 PRH1P02810 166 aa13.79□□□□□ -0.2
USHBP1-202ENST00000324554 PTAFRP25105 342 aa13.79□□□□□ -0.2
USHBP1-202ENST00000324554 PRDX4Q13162 271 aa13.79□□□□□ -0.2
USHBP1-202ENST00000324554 HMGN3Q15651 99 aa13.79□□□□□ -0.2
USHBP1-202ENST00000324554 ABHD17BQ5VST6 288 aa13.79□□□□□ -0.2
USHBP1-202ENST00000324554 CCDC71LQ8N9Z2 235 aa13.79□□□□□ -0.2
USHBP1-202ENST00000324554 EXTL1Q92935 676 aa13.79□□□□□ -0.2
USHBP1-202ENST00000324554 CALHM2Q9HA72 323 aa13.79□□□□□ -0.2
USHBP1-202ENST00000324554 BOD1L1Q8NFC6 3051 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 C5orf49A4QMS7 147 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 RPL36A-HNRNPH2H7BZ11 118 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 GLAP06280 429 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 ZNF44P15621 663 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 RAB5BP61020 215 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 COMMD1Q8N668 190 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 SLAMF9Q96A28 289 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 POM121Q96HA1 1249 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 USB1Q9BQ65 265 aaKnown RBP13.78□□□□□ -0.2
USHBP1-202ENST00000324554 PRRG4Q9BZD6 226 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 NKX2-6A6NCS4 301 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 FAM90A10PA6NDY2 464 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 FAM90A18PA6NE21 464 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 FAM90A16PA6NEW6 464 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 FAM90A20PA6NIJ5 464 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 FAM90A8PA6NJQ4 464 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 FAM90A7PA6NKC0 464 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 FAM90A22PA8MWA6 464 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 FAM90A12PA8MX19 464 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 FAM90A5PA8MXJ8 464 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 FAM90A23PA8MXZ1 464 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 IFNA4P05014 189 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 FAM90A15PP0C7V4 464 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 FAM90A13PP0C7W8 464 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 FAM90A14PP0C7W9 464 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 FAM90A24PP0C7X0 464 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 PPP1CCP36873 323 aaKnown RBP13.78□□□□□ -0.2
USHBP1-202ENST00000324554 HAAOP46952 286 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 BOD1Q96IK1 185 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 HS3ST6Q96QI5 342 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 B4GALT7Q9UBV7 327 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 FBXO7Q9Y3I1 522 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms