RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 A0A0G2JMZ2 1700 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 LRRC37A2A6NM11 1700 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 A0A1B0GVG6 124 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 TMEM41BQ5BJD5 291 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 TPRX1Q8N7U7 411 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 NEIL1Q96FI4 390 aaPredicted RBP11.79□□□□□ -0.52
RFFL-201ENST00000315249 CACNG5Q9UF02 275 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 J3QT63 122 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 ERVFRD-1P60508 538 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 CD300LDQ6UXZ3 194 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 SLC25A32Q9H2D1 315 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 ATP6V1G2-DDX39BF2Z307 99 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 PYCARD-AS1I3L0S3 204 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 J3KRW8 73 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 GNG7O60262 68 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 PDLIM4P50479 330 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 ARRDC1Q8N5I2 433 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 YIPF6Q96EC8 236 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 PMELP40967 661 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 ADIPOR1Q96A54 375 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 FNDC1Q4ZHG4 1894 aaPredicted RBP11.79□□□□□ -0.52
RFFL-201ENST00000315249 OR2J3O76001 311 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 MMP15P51511 669 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 BTG1P62324 171 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 ZNF787Q6DD87 383 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 SPACA3Q8IXA5 215 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 MUC15Q8N387 334 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 OR1L4Q8NGR5 311 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 PPP1R1CQ8WVI7 109 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 HARBI1Q96MB7 349 aa11.79□□□□□ -0.52
RFFL-201ENST00000315249 CSRP1P21291 193 aaKnown RBP11.78□□□□□ -0.52
RFFL-201ENST00000315249 LINC00303Q3SY05 128 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 TOR2AQ5JU69 321 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 ZNF770Q6IQ21 691 aaPredicted RBP11.78□□□□□ -0.52
RFFL-201ENST00000315249 BOLA1Q9Y3E2 137 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 MED12Q93074 2177 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 DBX1A6NMT0 343 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 SOCS1O15524 211 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 PXDC1Q5TGL8 231 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 CTAG2O75638 210 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 CYB5R3P00387 301 aaPredicted RBP11.78□□□□□ -0.52
RFFL-201ENST00000315249 LY6EQ16553 131 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 FLYWCH2Q96CP2 140 aaKnown RBP11.78□□□□□ -0.52
RFFL-201ENST00000315249 ADTRPQ96IZ2 230 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 WIPI2Q9Y4P8 454 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 LSM11P83369 360 aaKnown RBP eCLIP11.78□□□□□ -0.52
RFFL-201ENST00000315249 KCNMB1Q16558 191 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 CCDC144NLQ6NUI1 221 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 SLC26A10Q8NG04 563 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 TMED6Q8WW62 240 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 PARP11Q9NR21 331 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 OR5AC1P0C628 307 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 H3F3AP84243 136 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 SHISA5Q8N114 240 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 KLK13Q9UKR3 277 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 PCNX1Q96RV3 2341 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 CLDN14O95500 239 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 C10orf111Q8N326 155 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 VSTM2AQ8TAG5 236 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 PLEKHA2Q9HB19 425 aa11.78□□□□□ -0.52
RFFL-201ENST00000315249 LIMS3P0CW19 117 aa11.77□□□□□ -0.52
RFFL-201ENST00000315249 LIMS4P0CW20 117 aa11.77□□□□□ -0.52
RFFL-201ENST00000315249 OR2B8PP59922 312 aa11.77□□□□□ -0.52
RFFL-201ENST00000315249 PDZK1IP1Q13113 114 aa11.77□□□□□ -0.52
RFFL-201ENST00000315249 DYRK2Q92630 601 aa11.77□□□□□ -0.52
RFFL-201ENST00000315249 TIMP4Q99727 224 aa11.77□□□□□ -0.52
RFFL-201ENST00000315249 SRXN1Q9BYN0 137 aa11.77□□□□□ -0.52
RFFL-201ENST00000315249 ZMIZ1Q9ULJ6 1067 aa11.77□□□□□ -0.52
RFFL-201ENST00000315249 PCDHGA9Q9Y5G4 932 aaKnown RBP11.77□□□□□ -0.52
RFFL-201ENST00000315249 TAAR5O14804 337 aa11.77□□□□□ -0.52
RFFL-201ENST00000315249 IGHA2P01877 340 aa11.77□□□□□ -0.52
RFFL-201ENST00000315249 GIPP09681 153 aaPredicted RBP11.77□□□□□ -0.52
RFFL-201ENST00000315249 AKR1C3P42330 323 aa11.77□□□□□ -0.52
RFFL-201ENST00000315249 FFAR4Q5NUL3 377 aa11.77□□□□□ -0.52
RFFL-201ENST00000315249 ETV3LQ6ZN32 361 aa11.77□□□□□ -0.52
RFFL-201ENST00000315249 ZNF714Q96N38 554 aa11.77□□□□□ -0.52
RFFL-201ENST00000315249 ABHD14AQ9BUJ0 271 aa11.77□□□□□ -0.52
RFFL-201ENST00000315249 SLC52A3Q9NQ40 469 aa11.77□□□□□ -0.52
RFFL-201ENST00000315249 IGHV3-72A0A0B4J1Y9 119 aa11.77□□□□□ -0.53
RFFL-201ENST00000315249 METTL15P1P0C7V9 234 aa11.77□□□□□ -0.53
RFFL-201ENST00000315249 SSBP1Q04837 148 aaKnown RBP11.77□□□□□ -0.53
RFFL-201ENST00000315249 RPUSD3Q6P087 351 aaKnown RBP11.77□□□□□ -0.53
RFFL-201ENST00000315249 SLC16A12Q6ZSM3 486 aa11.77□□□□□ -0.53
RFFL-201ENST00000315249 DYNC2LI1Q8TCX1 351 aa11.77□□□□□ -0.53
RFFL-201ENST00000315249 BCL2L2Q92843 193 aaPredicted RBP11.77□□□□□ -0.53
RFFL-201ENST00000315249 SCARF2Q96GP6 870 aaPredicted RBP11.77□□□□□ -0.53
RFFL-201ENST00000315249 C1QCP02747 245 aa11.77□□□□□ -0.53
RFFL-201ENST00000315249 GABRB1P18505 474 aa11.77□□□□□ -0.53
RFFL-201ENST00000315249 RPL35P42766 123 aaKnown RBP11.77□□□□□ -0.53
RFFL-201ENST00000315249 PHYHD1Q5SRE7 291 aa11.77□□□□□ -0.53
RFFL-201ENST00000315249 CA10Q9NS85 328 aa11.77□□□□□ -0.53
RFFL-201ENST00000315249 ZNF826PQ6ZT77 177 aa11.77□□□□□ -0.53
RFFL-201ENST00000315249 LPAR3Q9UBY5 353 aa11.77□□□□□ -0.53
RFFL-201ENST00000315249 ZDHHC8Q9ULC8 765 aa11.77□□□□□ -0.53
RFFL-201ENST00000315249 GAB2Q9UQC2 676 aa11.77□□□□□ -0.53
RFFL-201ENST00000315249 MT-ND4LP03901 98 aa11.77□□□□□ -0.53
RFFL-201ENST00000315249 NUBP1P53384 320 aa11.77□□□□□ -0.53
RFFL-201ENST00000315249 FAM27E3Q08E93 113 aa11.77□□□□□ -0.53
RFFL-201ENST00000315249 MGAT2Q10469 447 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms