RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 GPR27Q9NS67 375 aa9.21□□□□□ -0.94
CLIP1-201ENST00000302528 IGHV3OR16-12A0A075B7B8 117 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 GAGE10A6NGK3 116 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 MPDU1O75352 247 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 TMEM33P57088 247 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 KHDC3LQ587J8 217 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 RAXQ9Y2V3 346 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 SRFP11831 508 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 GPR3P46089 330 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 TFPI2P48307 235 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 SPICQ8N5J4 248 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 STXBP6Q8NFX7 210 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 OIT3Q8WWZ8 545 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 COPS9Q8WXC6 57 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 GNRHR2Q96P88 292 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 INSIG2Q9Y5U4 225 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 TOGARAM1Q9Y4F4 1720 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 TRBV23-1A0A0A0MS06 115 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 C9orf172C9J069 976 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 ABLIM3O94929 683 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 PPP1R17O96001 155 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 CD74P04233 296 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 APELAP0DMC3 54 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 MEIG1Q5JSS6 88 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 HES3Q5TGS1 186 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 UBALD2Q8IYN6 164 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 MRGPRX1Q96LB2 322 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 CHRNA10Q9GZZ6 450 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 ZNF71Q9NQZ8 489 aaPredicted RBP9.2□□□□□ -0.94
CLIP1-201ENST00000302528 DDX60LQ5H9U9 1706 aaKnown RBP9.2□□□□□ -0.94
CLIP1-201ENST00000302528 IGLV3-10A0A075B6K4 115 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 OR2W5A6NFC9 320 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 SPNP16150 400 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 CIRBPQ14011 172 aaKnown RBP9.2□□□□□ -0.94
CLIP1-201ENST00000302528 FAM53AQ6NSI3 398 aaPredicted RBP9.2□□□□□ -0.94
CLIP1-201ENST00000302528 PRNTQ86SH4 94 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 TMEM183AQ8IXX5 376 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 NUDT10Q8NFP7 164 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 NUDT11Q96G61 164 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 TREM2Q9NZC2 230 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 A0A0B4J293 547 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 PDE6DO43924 150 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 SS18L1O75177 396 aaPredicted RBP9.2□□□□□ -0.94
CLIP1-201ENST00000302528 WNT5AP41221 380 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 SKP2Q13309 424 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 SMAD4Q13485 552 aaKnown RBP9.2□□□□□ -0.94
CLIP1-201ENST00000302528 PTOV1Q86YD1 416 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 WDFY1Q8IWB7 410 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 C4orf45Q96LM5 186 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 CYSLTR2Q9NS75 346 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 VAX2Q9UIW0 290 aa9.2□□□□□ -0.94
CLIP1-201ENST00000302528 KIAA1551Q9HCM1 1747 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 RREB1Q92766 1687 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 PAPPAQ13219 1627 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 DIRC3C9JPN6 131 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 RPS4XP62701 263 aaKnown RBP9.19□□□□□ -0.94
CLIP1-201ENST00000302528 ST3GAL2Q16842 350 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 DNLZQ5SXM8 178 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 SEZ6L2Q6UXD5 910 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 ALKAL1Q6UXT8 129 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 LDLRAD3Q86YD5 345 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 CALHM1Q8IU99 346 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 PTPMT1Q8WUK0 201 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-201ENST00000302528 EID2BQ96D98 161 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 CA10Q9NS85 328 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 IGKV3D-11A0A0A0MRZ8 115 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 B4DEV8 164 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 PRRT4C9JH25 899 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 IGKV3-11P04433 115 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 DLK1P80370 383 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 MPV17LQ2QL34 196 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 WDR25Q64LD2 544 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-201ENST00000302528 DDB2Q92466 427 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 MYH14Q7Z406 1995 aaKnown RBP9.19□□□□□ -0.94
CLIP1-201ENST00000302528 TMEM255AQ5JRV8 349 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 TDHQ8IZJ6 230 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 ISOC2Q96AB3 205 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 MTFP1Q9UDX5 166 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 PRNDQ9UKY0 176 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 TCRBV5S1A1TA0A578 114 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 PAGE4O60829 102 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 DNAL4O96015 105 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 ZNF735P0CB33 412 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 LGALS3P17931 250 aaKnown RBP9.19□□□□□ -0.94
CLIP1-201ENST00000302528 P2RY1P47900 373 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 RAB9AP51151 201 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 SLC25A1P53007 311 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 FAHD1Q6P587 224 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 ZNF383Q8NA42 475 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 OR10D3Q8NH80 312 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 PRR7Q8TB68 274 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 SAP30LQ9HAJ7 183 aa9.19□□□□□ -0.94
CLIP1-201ENST00000302528 RBFOX2O43251 390 aaKnown RBP eCLIP9.18□□□□□ -0.943e-7■■■□□ 15.9
CLIP1-201ENST00000302528 EIF3IQ13347 325 aaKnown RBP9.18□□□□□ -0.94
CLIP1-201ENST00000302528 SLC35E3Q7Z769 313 aa9.18□□□□□ -0.94
CLIP1-201ENST00000302528 SPEM1Q8N4L4 309 aa9.18□□□□□ -0.94
CLIP1-201ENST00000302528 HARBI1Q96MB7 349 aa9.18□□□□□ -0.94
CLIP1-201ENST00000302528 MMP25Q9NPA2 562 aa9.18□□□□□ -0.94
CLIP1-201ENST00000302528 AKIP1Q9NQ31 210 aa9.18□□□□□ -0.94
CLIP1-201ENST00000302528 MPC1Q9Y5U8 109 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms