RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 CXXC4Q9H2H0 198 aa13.21□□□□□ -0.29
LSM6-201ENST00000296581 RCC2Q9P258 522 aaKnown RBP13.21□□□□□ -0.29
LSM6-201ENST00000296581 PCNX1Q96RV3 2341 aa13.21□□□□□ -0.29
LSM6-201ENST00000296581 OR7C1O76099 320 aaPredicted RBP13.2□□□□□ -0.3
LSM6-201ENST00000296581 PMP2P02689 132 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 SNU13P55769 128 aaKnown RBP13.2□□□□□ -0.3
LSM6-201ENST00000296581 ERVK11-1P61568 191 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 IL13RA2Q14627 380 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 GLDNQ6ZMI3 551 aaPredicted RBP13.2□□□□□ -0.3
LSM6-201ENST00000296581 C12orf45Q8N5I9 185 aaPredicted RBP13.2□□□□□ -0.3
LSM6-201ENST00000296581 OR13G1Q8NGZ3 307 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 SCARB1Q8WTV0 552 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 ZNF488Q96MN9 340 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 CMSS1Q9BQ75 279 aaKnown RBP13.2□□□□□ -0.3
LSM6-201ENST00000296581 HDHD3Q9BSH5 251 aaPredicted RBP13.2□□□□□ -0.3
LSM6-201ENST00000296581 ST6GALNAC5Q9BVH7 336 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 CHST6Q9GZX3 395 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 BEX1Q9HBH7 125 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 IL36RNQ9UBH0 155 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 ZNF230Q9UIE0 474 aaPredicted RBP13.2□□□□□ -0.3
LSM6-201ENST00000296581 NPTNQ9Y639 398 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 CADP27708 2225 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 WRBO00258 174 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 ZZEF1O43149 2961 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 IGHV3-13P01766 116 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 S100A9P06702 114 aaKnown RBP13.2□□□□□ -0.3
LSM6-201ENST00000296581 THBDP07204 575 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 AMY2BP19961 511 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 ANXA7P20073 488 aaKnown RBP13.2□□□□□ -0.3
LSM6-201ENST00000296581 KCNJ3P48549 501 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 TAS2R46P59540 309 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 PDCD1Q15116 288 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 PCSK4Q6UW60 755 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 SLC36A1Q7Z2H8 476 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 Q8IYB0 196 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 FAM58AQ8N1B3 248 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 OR1S1Q8NH92 325 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 TMEM171Q8WVE6 324 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 TLNRD1Q9H1K6 362 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 MIOXQ9UGB7 285 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 OSGIN2Q9Y236 505 aa13.2□□□□□ -0.3
LSM6-201ENST00000296581 ATRXP46100 2492 aa13.19□□□□□ -0.3
LSM6-201ENST00000296581 HPXP02790 462 aa13.19□□□□□ -0.3
LSM6-201ENST00000296581 CSN2P05814 226 aa13.19□□□□□ -0.3
LSM6-201ENST00000296581 PPP3CBP16298 524 aa13.19□□□□□ -0.3
LSM6-201ENST00000296581 RPS23P62266 143 aaKnown RBP13.19□□□□□ -0.3
LSM6-201ENST00000296581 ALKAL2Q6UX46 152 aa13.19□□□□□ -0.3
LSM6-201ENST00000296581 TMEM108Q6UXF1 575 aa13.19□□□□□ -0.3
LSM6-201ENST00000296581 ARRDC1Q8N5I2 433 aa13.19□□□□□ -0.3
LSM6-201ENST00000296581 OR5H2Q8NGV7 314 aa13.19□□□□□ -0.3
LSM6-201ENST00000296581 ALX4Q9H161 411 aaPredicted RBP13.19□□□□□ -0.3
LSM6-201ENST00000296581 IGLV3-9A0A075B6K5 115 aa13.19□□□□□ -0.3
LSM6-201ENST00000296581 CCL21O00585 134 aa13.19□□□□□ -0.3
LSM6-201ENST00000296581 IFNA6P05013 189 aa13.19□□□□□ -0.3
LSM6-201ENST00000296581 S100A8P05109 93 aa13.19□□□□□ -0.3
LSM6-201ENST00000296581 RNF224P0DH78 156 aa13.19□□□□□ -0.3
LSM6-201ENST00000296581 PGA5P0DJD9 388 aa13.19□□□□□ -0.3
LSM6-201ENST00000296581 VSIG10L2P0DP72 767 aa13.19□□□□□ -0.3
LSM6-201ENST00000296581 CXCL2P19875 107 aa13.19□□□□□ -0.3
LSM6-201ENST00000296581 ASCL1P50553 236 aa13.19□□□□□ -0.3
LSM6-201ENST00000296581 SCGB2B2Q4G0G5 96 aa13.19□□□□□ -0.3
LSM6-201ENST00000296581 BRICD5Q6PL45 260 aa13.19□□□□□ -0.3
LSM6-201ENST00000296581 MRGPRFQ96AM1 343 aa13.19□□□□□ -0.3
LSM6-201ENST00000296581 NRIP2Q9BQI9 281 aa13.19□□□□□ -0.3
LSM6-201ENST00000296581 MSL2Q9HCI7 577 aa13.19□□□□□ -0.3
LSM6-201ENST00000296581 MYOZ1Q9NP98 299 aaPredicted RBP13.19□□□□□ -0.3
LSM6-201ENST00000296581 ZNF701Q9NV72 531 aaPredicted RBP13.19□□□□□ -0.3
LSM6-201ENST00000296581 F5H5P2 479 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 CDIPTO14735 213 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 RLN1P04808 185 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 FCGR3AP08637 254 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 FBXL19-AS1Q494R0 122 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 LRP11Q86VZ4 500 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 WFDC8Q8IUA0 241 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 C11orf53Q8IXP5 236 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 ARL6IP6Q8N6S5 226 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 NUP37Q8NFH4 326 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 OR5AP2Q8NGF4 316 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 MAFIPQ8WZ33 124 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 ELMOD3Q96FG2 381 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 PDCD10Q9BUL8 212 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 IGKV1D-8A0A087WSZ0 117 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 UBE2QL1A1L167 161 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 SNRPGP15A8MWD9 76 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 GRPP07492 148 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 SPP1P10451 314 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 KLF3P57682 345 aaPredicted RBP13.18□□□□□ -0.3
LSM6-201ENST00000296581 DHODHQ02127 395 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 ATPAF1Q5TC12 328 aaPredicted RBP13.18□□□□□ -0.3
LSM6-201ENST00000296581 DMBX1Q8NFW5 382 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 C2CD4CQ8TF44 421 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 DYRK2Q92630 601 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 ZNF442Q9H7R0 627 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 SPACA1Q9HBV2 294 aa13.18□□□□□ -0.3
LSM6-201ENST00000296581 GPN1Q9HCN4 374 aaPredicted RBP13.18□□□□□ -0.3
LSM6-201ENST00000296581 DPRXA6NFQ7 191 aa13.17□□□□□ -0.3
LSM6-201ENST00000296581 L7N2F9 121 aa13.17□□□□□ -0.3
LSM6-201ENST00000296581 PVALBP20472 110 aaPredicted RBP13.17□□□□□ -0.3
LSM6-201ENST00000296581 CHRNB4P30926 498 aa13.17□□□□□ -0.3
LSM6-201ENST00000296581 MZT1Q08AG7 82 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms