RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 COX19Q49B96 90 aa11.21□□□□□ -0.61
PTCD1-201ENST00000292478 SLC2A9Q9NRM0 540 aa11.21□□□□□ -0.61
PTCD1-201ENST00000292478 WDR73Q6P4I2 378 aa11.21□□□□□ -0.62
PTCD1-201ENST00000292478 GAPTQ8N292 157 aa11.21□□□□□ -0.62
PTCD1-201ENST00000292478 ADAT3Q96EY9 351 aaPredicted RBP11.21□□□□□ -0.62
PTCD1-201ENST00000292478 SMOC1Q9H4F8 434 aa11.21□□□□□ -0.62
PTCD1-201ENST00000292478 NAT8Q9UHE5 227 aa11.21□□□□□ -0.62
PTCD1-201ENST00000292478 RGPD3A6NKT7 1758 aaPredicted RBP11.21□□□□□ -0.62
PTCD1-201ENST00000292478 IGHV3-43A0A0B4J1X8 118 aa11.21□□□□□ -0.62
PTCD1-201ENST00000292478 IGHV3-43DP0DP04 118 aa11.21□□□□□ -0.62
PTCD1-201ENST00000292478 FGF5P12034 268 aa11.21□□□□□ -0.62
PTCD1-201ENST00000292478 FUT5Q11128 374 aa11.21□□□□□ -0.62
PTCD1-201ENST00000292478 ZNF665Q9H7R5 613 aa11.21□□□□□ -0.62
PTCD1-201ENST00000292478 ZMIZ1Q9ULJ6 1067 aa11.21□□□□□ -0.62
PTCD1-201ENST00000292478 LINC00862A6NCI5 91 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 HSBP1O75506 76 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 GCM2O75603 506 aaPredicted RBP11.2□□□□□ -0.62
PTCD1-201ENST00000292478 SLC25A5P05141 298 aaKnown RBP11.2□□□□□ -0.62
PTCD1-201ENST00000292478 CXCL3P19876 107 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 VAX1Q5SQQ9 334 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 BVESQ8NE79 360 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 SBF2Q86WG5 1849 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 OPN1MWP04001 364 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 HOXD4P09016 255 aaPredicted RBP11.2□□□□□ -0.62
PTCD1-201ENST00000292478 OPN1MW2P0DN77 364 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 OPN1MW3P0DN78 364 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 NANOS3P60323 173 aaKnown RBP11.2□□□□□ -0.62
PTCD1-201ENST00000292478 TFF2Q03403 129 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 DPPA3Q6W0C5 159 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 ABHD3Q8WU67 409 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 MIA3Q5JRA6 1907 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 TRPM6Q9BX84 2022 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 HPXP02790 462 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 ISG15P05161 165 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 FCARP24071 287 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 SULT1A1P50225 295 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 ANAPC16Q96DE5 110 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 PLPPR2Q96GM1 343 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 DDA1Q9BW61 102 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 SEC11CQ9BY50 192 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 TECRQ9NZ01 308 aaKnown RBP11.2□□□□□ -0.62
PTCD1-201ENST00000292478 IGHV1-45A0A0A0MS14 117 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 A0A1W2PNV4 684 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 PLAC9Q5JTB6 97 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 SEZ6L2Q6UXD5 910 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 ZNF66Q6ZN08 573 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 RND1Q92730 232 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 GRAMD2BQ96HH9 432 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 PRNDQ9UKY0 176 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 F5P12259 2224 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 MYO7AQ13402 2215 aa11.2□□□□□ -0.62
PTCD1-201ENST00000292478 COL11A1P12107 1806 aaPredicted RBP11.2□□□□□ -0.62
PTCD1-201ENST00000292478 CDIPTO14735 213 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 CHST1O43916 411 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 FNDC7Q5VTL7 733 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 CD200R1LQ6Q8B3 271 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 DTD1Q8TEA8 209 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 TDRD15B5MCY1 1934 aaKnown RBP11.19□□□□□ -0.62
PTCD1-201ENST00000292478 C3orf80F5H4A9 247 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 NQO2P16083 231 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 RPEL1Q2QD12 228 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 FAM74A3Q4VXF1 159 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 NOL4LQ96MY1 436 aaPredicted RBP11.19□□□□□ -0.62
PTCD1-201ENST00000292478 TRAF4Q9BUZ4 470 aaPredicted RBP11.19□□□□□ -0.62
PTCD1-201ENST00000292478 TTTY12Q9BZ98 90 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 RNF122Q9H9V4 155 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 KLHDC2Q9Y2U9 406 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 TMEM218A2RU14 115 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 SMIM17P0DL12 118 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 CEBPEQ15744 281 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 FA2HQ7L5A8 372 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 ZPLD1Q8TCW7 415 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 CCL28Q9NRJ3 127 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 SIRT4Q9Y6E7 314 aaPredicted RBP11.19□□□□□ -0.62
PTCD1-201ENST00000292478 GREB1LQ9C091 1923 aaPredicted RBP11.19□□□□□ -0.62
PTCD1-201ENST00000292478 FAM90A27PA6NNH2 459 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 SEC11BP0C7V7 166 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 RBM11P57052 281 aaKnown RBP11.19□□□□□ -0.62
PTCD1-201ENST00000292478 MESP2Q0VG99 397 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 FAM210BQ96KR6 192 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 PARP11Q9NR21 331 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 ARL2-SNX15V9GYD0 113 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 FAM90A10PA6NDY2 464 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 FAM90A18PA6NE21 464 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 FAM90A16PA6NEW6 464 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 FAM90A20PA6NIJ5 464 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 FAM90A8PA6NJQ4 464 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 FAM90A7PA6NKC0 464 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 FAM90A22PA8MWA6 464 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 FAM90A12PA8MX19 464 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 FAM90A5PA8MXJ8 464 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 FAM90A23PA8MXZ1 464 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 GATCO43716 136 aaKnown RBP11.19□□□□□ -0.62
PTCD1-201ENST00000292478 FAM90A15PP0C7V4 464 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 FAM90A13PP0C7W8 464 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 FAM90A14PP0C7W9 464 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 FAM90A24PP0C7X0 464 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 IQCJQ1A5X6 159 aa11.19□□□□□ -0.62
PTCD1-201ENST00000292478 LGALSLQ3ZCW2 172 aaPredicted RBP11.19□□□□□ -0.62
PTCD1-201ENST00000292478 OR8B3Q8NGG8 313 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms