RNA–Protein interactions for RNA: ENST00000272638.13

UBXN4-201, Transcript of UBX domain protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBXN4, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-201ENST00000272638 ARR3P36575 388 aa10.85□□□□□ -0.67
UBXN4-201ENST00000272638 RAB5BP61020 215 aa10.85□□□□□ -0.67
UBXN4-201ENST00000272638 HGFACQ04756 655 aa10.85□□□□□ -0.67
UBXN4-201ENST00000272638 TRIP6Q15654 476 aaKnown RBP10.85□□□□□ -0.67
UBXN4-201ENST00000272638 MDP1Q86V88 176 aa10.85□□□□□ -0.67
UBXN4-201ENST00000272638 ZNF709Q8N972 641 aa10.85□□□□□ -0.67
UBXN4-201ENST00000272638 SHARPINQ9H0F6 387 aa10.85□□□□□ -0.67
UBXN4-201ENST00000272638 UMAD1C9J7I0 102 aa10.84□□□□□ -0.67
UBXN4-201ENST00000272638 TERTO14746 1132 aaKnown RBP10.84□□□□□ -0.67
UBXN4-201ENST00000272638 ZNF17P17021 662 aa10.84□□□□□ -0.67
UBXN4-201ENST00000272638 GNG3P63215 75 aa10.84□□□□□ -0.67
UBXN4-201ENST00000272638 RUNX1Q01196 453 aa10.84□□□□□ -0.67
UBXN4-201ENST00000272638 ZNF826PQ6ZT77 177 aa10.84□□□□□ -0.67
UBXN4-201ENST00000272638 OR1K1Q8NGR3 316 aa10.84□□□□□ -0.67
UBXN4-201ENST00000272638 SLC25A31Q9H0C2 315 aa10.84□□□□□ -0.67
UBXN4-201ENST00000272638 TLNRD1Q9H1K6 362 aa10.84□□□□□ -0.67
UBXN4-201ENST00000272638 PNRC2Q9NPJ4 139 aaKnown RBP10.84□□□□□ -0.67
UBXN4-201ENST00000272638 GNG13Q9P2W3 67 aa10.84□□□□□ -0.67
UBXN4-201ENST00000272638 A0A0U1RQK1 487 aa10.84□□□□□ -0.67
UBXN4-201ENST00000272638 ZNF724A8MTY0 619 aa10.84□□□□□ -0.67
UBXN4-201ENST00000272638 SRSF10O75494 262 aaKnown RBP10.84□□□□□ -0.67
UBXN4-201ENST00000272638 SRSF3P84103 164 aaKnown RBP10.84□□□□□ -0.67
UBXN4-201ENST00000272638 FAM122CQ6P4D5 195 aa10.84□□□□□ -0.67
UBXN4-201ENST00000272638 PUSL1Q8N0Z8 303 aaKnown RBP10.84□□□□□ -0.67
UBXN4-201ENST00000272638 TCTEX1D2Q8WW35 142 aa10.84□□□□□ -0.67
UBXN4-201ENST00000272638 ERGIC1Q969X5 290 aa10.84□□□□□ -0.67
UBXN4-201ENST00000272638 DMRTA2Q96SC8 542 aa10.84□□□□□ -0.67
UBXN4-201ENST00000272638 ZFP57Q9NU63 452 aa10.84□□□□□ -0.67
UBXN4-201ENST00000272638 CST4P01036 141 aa10.84□□□□□ -0.67
UBXN4-201ENST00000272638 H2AFB1P0C5Y9 115 aa10.84□□□□□ -0.67
UBXN4-201ENST00000272638 METTL15P1P0C7V9 234 aa10.84□□□□□ -0.67
UBXN4-201ENST00000272638 NTF4P34130 210 aa10.84□□□□□ -0.67
UBXN4-201ENST00000272638 RBM11P57052 281 aaKnown RBP10.84□□□□□ -0.67
UBXN4-201ENST00000272638 CXorf66Q5JRM2 361 aaPredicted RBP10.84□□□□□ -0.67
UBXN4-201ENST00000272638 TMEM54Q969K7 222 aa10.84□□□□□ -0.67
UBXN4-201ENST00000272638 MARS2Q96GW9 593 aaKnown RBP10.84□□□□□ -0.67
UBXN4-201ENST00000272638 UQCC1Q9NVA1 299 aa10.84□□□□□ -0.67
UBXN4-201ENST00000272638 DOCK11Q5JSL3 2073 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 LOC390937A0A1W2PQ73 354 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 C9orf172C9J069 976 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 ARG1P05089 322 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 MELTFP08582 738 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 SLC25A4P12235 298 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 ERVS71-1P61550 626 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 C10orf128Q5T292 105 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 NSUN5P2Q63ZY6 315 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 RTL8AQ9BWD3 113 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 MUC22E2RYF6 1773 aaPredicted RBP10.83□□□□□ -0.68
UBXN4-201ENST00000272638 DENND4AQ7Z401 1863 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 IGKV1-27A0A075B6S5 117 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 IGKV1-12A0A0C4DH73 117 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 TTLL8A6PVC2 850 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 MPPED1O15442 326 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 SYNGR3O43761 229 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 IGKV1D-12P01611 117 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 MBPP02686 304 aaPredicted RBP10.83□□□□□ -0.68
UBXN4-201ENST00000272638 ECI1P42126 302 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 SLC25A53Q5H9E4 307 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 LIAT1Q6ZQX7 453 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 ZNF107Q9UII5 783 aaPredicted RBP10.83□□□□□ -0.68
UBXN4-201ENST00000272638 TFF1P04155 84 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 MUC1P15941 1255 aaPredicted RBP10.83□□□□□ -0.68
UBXN4-201ENST00000272638 LPAR6P43657 344 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 F2RL1P55085 397 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 UBE2KP61086 200 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 RAB11AP62491 216 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 ZNF154Q13106 437 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 NABP1Q96AH0 204 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 GUCD1Q96NT3 240 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 LPAR3Q9UBY5 353 aa10.83□□□□□ -0.68
UBXN4-201ENST00000272638 B4E171 279 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 SP1P08047 785 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 CEACAM6P40199 344 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 TSPAN7P41732 249 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 PDZD11Q5EBL8 140 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 BTNL3Q6UXE8 466 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 OR2C3Q8N628 320 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 CLRN3Q8NCR9 226 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 RNF126Q9BV68 326 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 PLEKHA2Q9HB19 425 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 WASF3Q9UPY6 502 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 MMP24Q9Y5R2 645 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 LIPGQ9Y5X9 500 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 LRRC3CA6NJW4 275 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 F8VVB4 439 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 F8VWA3 439 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 CHST1O43916 411 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 ACTL6AO96019 429 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 NPBWR1P48145 328 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 ZFP36L1Q07352 338 aaKnown RBP10.82□□□□□ -0.68
UBXN4-201ENST00000272638 GUK1Q16774 197 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 ZPBPQ9BS86 351 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 SH3BGRL3Q9H299 93 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 SLC2A8Q9NY64 477 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 CACNG5Q9UF02 275 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 RHBDL1O75783 438 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 ZNF708P17019 499 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 CHATP28329 748 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 OR3A1P47881 315 aa10.82□□□□□ -0.68
UBXN4-201ENST00000272638 DMBX1Q8NFW5 382 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms