RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 DEFB108BQ8NET1 73 aa13.91□□□□□ -0.18
USP4-201ENST00000265560 ZNF486Q96H40 463 aaPredicted RBP13.91□□□□□ -0.18
USP4-201ENST00000265560 COQ3Q9NZJ6 369 aa13.91□□□□□ -0.18
USP4-201ENST00000265560 GPR132Q9UNW8 380 aa13.91□□□□□ -0.18
USP4-201ENST00000265560 MEIKINA0A087WXM9 373 aa13.9□□□□□ -0.18
USP4-201ENST00000265560 HAND1O96004 215 aa13.9□□□□□ -0.18
USP4-201ENST00000265560 PTAFRP25105 342 aa13.9□□□□□ -0.18
USP4-201ENST00000265560 PHLDA2Q53GA4 152 aa13.9□□□□□ -0.18
USP4-201ENST00000265560 NHLRC3Q5JS37 347 aa13.9□□□□□ -0.18
USP4-201ENST00000265560 SLC25A42Q86VD7 318 aa13.9□□□□□ -0.18
USP4-201ENST00000265560 LHFPL1Q86WI0 220 aa13.9□□□□□ -0.18
USP4-201ENST00000265560 C12orf45Q8N5I9 185 aaPredicted RBP13.9□□□□□ -0.18
USP4-201ENST00000265560 C9orf170A2RU37 121 aa13.9□□□□□ -0.18
USP4-201ENST00000265560 TMEM210A6NLX4 147 aa13.9□□□□□ -0.18
USP4-201ENST00000265560 DTYMKP23919 212 aa13.9□□□□□ -0.18
USP4-201ENST00000265560 PLA2G5P39877 138 aa13.9□□□□□ -0.18
USP4-201ENST00000265560 AESQ08117 197 aa13.9□□□□□ -0.18
USP4-201ENST00000265560 HERPUD1Q15011 391 aa13.9□□□□□ -0.18
USP4-201ENST00000265560 ACTBL2Q562R1 376 aa13.9□□□□□ -0.18
USP4-201ENST00000265560 ASCC1Q8N9N2 400 aaKnown RBP13.9□□□□□ -0.18
USP4-201ENST00000265560 TMEM165Q9HC07 324 aa13.9□□□□□ -0.18
USP4-201ENST00000265560 NECAP2Q9NVZ3 263 aa13.9□□□□□ -0.18
USP4-201ENST00000265560 LRRK2Q5S007 2527 aa13.9□□□□□ -0.18
USP4-201ENST00000265560 SNRPGP15A8MWD9 76 aa13.9□□□□□ -0.18
USP4-201ENST00000265560 TPD52L2O43399 206 aaKnown RBP13.9□□□□□ -0.18
USP4-201ENST00000265560 CA11O75493 328 aa13.9□□□□□ -0.18
USP4-201ENST00000265560 NAPSAO96009 420 aa13.9□□□□□ -0.18
USP4-201ENST00000265560 ADIPOQQ15848 244 aa13.9□□□□□ -0.18
USP4-201ENST00000265560 MRPL30Q8TCC3 161 aaKnown RBP13.9□□□□□ -0.18
USP4-201ENST00000265560 PIPOXQ9P0Z9 390 aa13.9□□□□□ -0.18
USP4-201ENST00000265560 ZBTB25P24278 435 aa13.89□□□□□ -0.19
USP4-201ENST00000265560 GZMKP49863 264 aa13.89□□□□□ -0.19
USP4-201ENST00000265560 LRRC37A5PQ49AS3 106 aa13.89□□□□□ -0.19
USP4-201ENST00000265560 ZNF660Q6AZW8 331 aaPredicted RBP13.89□□□□□ -0.19
USP4-201ENST00000265560 OR11L1Q8NGX0 322 aa13.89□□□□□ -0.19
USP4-201ENST00000265560 MED30Q96HR3 178 aa13.89□□□□□ -0.19
USP4-201ENST00000265560 PLK3Q9H4B4 646 aa13.89□□□□□ -0.19
USP4-201ENST00000265560 Q9N2K0 584 aa13.89□□□□□ -0.19
USP4-201ENST00000265560 MGAT4AQ9UM21 535 aa13.89□□□□□ -0.19
USP4-201ENST00000265560 IGLV3-9A0A075B6K5 115 aa13.89□□□□□ -0.19
USP4-201ENST00000265560 IGKV1-6A0A0C4DH72 117 aa13.89□□□□□ -0.19
USP4-201ENST00000265560 SH2D1BO14796 132 aa13.89□□□□□ -0.19
USP4-201ENST00000265560 IGHV1-46P01743 117 aa13.89□□□□□ -0.19
USP4-201ENST00000265560 AADACP22760 399 aa13.89□□□□□ -0.19
USP4-201ENST00000265560 CD34P28906 385 aa13.89□□□□□ -0.19
USP4-201ENST00000265560 CHRNB4P30926 498 aa13.89□□□□□ -0.19
USP4-201ENST00000265560 GABRA2P47869 451 aa13.89□□□□□ -0.19
USP4-201ENST00000265560 SELENOVP59797 346 aa13.89□□□□□ -0.19
USP4-201ENST00000265560 SP6Q3SY56 376 aa13.89□□□□□ -0.19
USP4-201ENST00000265560 ACP7Q6ZNF0 438 aa13.89□□□□□ -0.19
USP4-201ENST00000265560 POC1AQ8NBT0 407 aa13.89□□□□□ -0.19
USP4-201ENST00000265560 MRPL24Q96A35 216 aaKnown RBP13.89□□□□□ -0.19
USP4-201ENST00000265560 MEGF10Q96KG7 1140 aa13.89□□□□□ -0.19
USP4-201ENST00000265560 YLPM1P49750 1951 aaKnown RBP13.89□□□□□ -0.19
USP4-201ENST00000265560 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.88□□□□□ -0.19
USP4-201ENST00000265560 TSC22D2O75157 780 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 CYB5R3P00387 301 aaPredicted RBP13.88□□□□□ -0.19
USP4-201ENST00000265560 KIRREL1Q96J84 757 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 DCTN5Q9BTE1 182 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 HSPB11Q9Y547 144 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 FAM90A10PA6NDY2 464 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 FAM90A18PA6NE21 464 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 FAM90A16PA6NEW6 464 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 FAM90A20PA6NIJ5 464 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 FAM90A8PA6NJQ4 464 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 FAM90A7PA6NKC0 464 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 FAM90A22PA8MWA6 464 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 FAM90A12PA8MX19 464 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 FAM90A5PA8MXJ8 464 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 FAM90A23PA8MXZ1 464 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.88□□□□□ -0.19
USP4-201ENST00000265560 C1QBP02746 253 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 FAM90A15PP0C7V4 464 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 FAM90A13PP0C7W8 464 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 FAM90A14PP0C7W9 464 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 FAM90A24PP0C7X0 464 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 SELLP14151 372 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 SSTR2P30874 369 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 SUPT4H1P63272 117 aaKnown RBP13.88□□□□□ -0.19
USP4-201ENST00000265560 LYG2Q86SG7 212 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 ZDHHC22Q8N966 263 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 EDARQ9UNE0 448 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 G3V3Q6 166 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 GNLYP22749 145 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 DNASE1P24855 282 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 ASCL1P50553 236 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 TNFAIP6P98066 277 aaPredicted RBP13.88□□□□□ -0.19
USP4-201ENST00000265560 COL10A1Q03692 680 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 EDDM3AQ14507 147 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 GCSAMQ8N6F7 178 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 ESRP2Q9H6T0 727 aaKnown RBP13.88□□□□□ -0.19
USP4-201ENST00000265560 TRAPPC2LQ9UL33 140 aa13.88□□□□□ -0.19
USP4-201ENST00000265560 A0A1B0GW55 424 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 MPTX1A8MV57 137 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 ZG16O60844 167 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 ADAP1O75689 374 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 DUX4L2P0CJ85 424 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 DUX4L3P0CJ86 424 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 DUX4L4P0CJ87 422 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 DUX4L5P0CJ88 424 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms