RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 DANCRP0C864 163 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 ATP6V0CP27449 155 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 RAC1P63000 192 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 CCL20P78556 96 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 DPPA2Q7Z7J5 298 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 TMEM123Q8N131 208 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 GTF3AQ92664 365 aaKnown RBP10.94□□□□□ -0.66
LIG1-201ENST00000263274 EXTL1Q92935 676 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 SLC35B3Q9H1N7 401 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 GFOD1Q9NXC2 390 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 TUBD1Q9UJT1 453 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 PATE3B3GLJ2 98 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 MSTNO14793 375 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 CBR3O75828 277 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 OR8U8P0C7N1 319 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 RFPL3SP0C7P2 107 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 RAB5AP20339 215 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 FUT3P21217 361 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 TAGLN2P37802 199 aaKnown RBP10.94□□□□□ -0.66
LIG1-201ENST00000263274 NDUFA6P56556 154 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 UBE2KP61086 200 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 MRPS34P82930 218 aaKnown RBP10.94□□□□□ -0.66
LIG1-201ENST00000263274 H3F3AP84243 136 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 SLC23A3Q6PIS1 610 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 SSC4DQ8WTU2 575 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 TMEM54Q969K7 222 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 CALHM2Q9HA72 323 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 TREM2Q9NZC2 230 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 TIMM10BQ9Y5J6 103 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 LIPGQ9Y5X9 500 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 HS3ST3B1Q9Y662 390 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 SVILO95425 2214 aa10.94□□□□□ -0.66
LIG1-201ENST00000263274 ZNF724A8MTY0 619 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 MPPED1O15442 326 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 CNOT4O95628 575 aaKnown RBP10.93□□□□□ -0.66
LIG1-201ENST00000263274 HLA-HP01893 362 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 SCTP09683 121 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 SEC11BP0C7V7 166 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 SSPNQ14714 243 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 C10orf128Q5T292 105 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 AKR1C8PQ5T2L2 129 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 TBC1D26Q86UD7 250 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 OR56B2PQ8NGI1 322 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 OR10D3Q8NH80 312 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 DNASE2BQ8WZ79 361 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 CPNE4Q96A23 557 aaPredicted RBP10.93□□□□□ -0.66
LIG1-201ENST00000263274 SEBOXQ9HB31 216 aaPredicted RBP10.93□□□□□ -0.66
LIG1-201ENST00000263274 IL36RNQ9UBH0 155 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 METTL1Q9UBP6 276 aaKnown RBP10.93□□□□□ -0.66
LIG1-201ENST00000263274 FRYQ5TBA9 3013 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 ZFHX2Q9C0A1 2572 aaPredicted RBP10.93□□□□□ -0.66
LIG1-201ENST00000263274 ZNF587BE7ETH6 402 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 AP4M1O00189 453 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 HMGN3Q15651 99 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 C17orf78Q8N4C9 275 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 OR1J1Q8NGS3 322 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 TMEM38BQ9NVV0 291 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 IGLV3-32A0A0A0MS00 114 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 FOXI3A8MTJ6 420 aaPredicted RBP10.93□□□□□ -0.66
LIG1-201ENST00000263274 CTSSP25774 331 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 FKBP2P26885 142 aaKnown RBP10.93□□□□□ -0.66
LIG1-201ENST00000263274 FOLR3P41439 243 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 FUT6P51993 359 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 KIAA0141Q14154 515 aaPredicted RBP10.93□□□□□ -0.66
LIG1-201ENST00000263274 GAPTQ8N292 157 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 ZNF488Q96MN9 340 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 HIST1H2AAQ96QV6 131 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 CCL28Q9NRJ3 127 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 SEMA5BQ9P283 1151 aa10.93□□□□□ -0.66
LIG1-201ENST00000263274 A0A087WZY1 265 aa10.92□□□□□ -0.66
LIG1-201ENST00000263274 C5orf49A4QMS7 147 aa10.92□□□□□ -0.66
LIG1-201ENST00000263274 ARGFXA6NJG6 315 aa10.92□□□□□ -0.66
LIG1-201ENST00000263274 TERTO14746 1132 aaKnown RBP10.92□□□□□ -0.66
LIG1-201ENST00000263274 ALDH3B1P43353 468 aa10.92□□□□□ -0.66
LIG1-201ENST00000263274 RAB5CP51148 216 aa10.92□□□□□ -0.66
LIG1-201ENST00000263274 CLDN15P56746 228 aa10.92□□□□□ -0.66
LIG1-201ENST00000263274 ZNF154Q13106 437 aa10.92□□□□□ -0.66
LIG1-201ENST00000263274 GPR157Q5UAW9 335 aa10.92□□□□□ -0.66
LIG1-201ENST00000263274 MRPL21Q7Z2W9 205 aaKnown RBP10.92□□□□□ -0.66
LIG1-201ENST00000263274 AGBL5Q8NDL9 886 aa10.92□□□□□ -0.66
LIG1-201ENST00000263274 SGCZQ96LD1 299 aa10.92□□□□□ -0.66
LIG1-201ENST00000263274 STARD10Q9Y365 291 aa10.92□□□□□ -0.66
LIG1-201ENST00000263274 CNOT1A5YKK6 2376 aaKnown RBP10.92□□□□□ -0.66
LIG1-201ENST00000263274 IGHV1-45A0A0A0MS14 117 aa10.92□□□□□ -0.66
LIG1-201ENST00000263274 LOC102725191A0A1B0GVB3 256 aa10.92□□□□□ -0.66
LIG1-201ENST00000263274 GJE1A6NN92 205 aa10.92□□□□□ -0.66
LIG1-201ENST00000263274 ETV2O00321 342 aaPredicted RBP10.92□□□□□ -0.66
LIG1-201ENST00000263274 SYNGR3O43761 229 aa10.92□□□□□ -0.66
LIG1-201ENST00000263274 MRPL33O75394 65 aaKnown RBP10.92□□□□□ -0.66
LIG1-201ENST00000263274 BCL3P20749 454 aa10.92□□□□□ -0.66
LIG1-201ENST00000263274 DYNLT3P51808 116 aa10.92□□□□□ -0.66
LIG1-201ENST00000263274 SUCLG1P53597 346 aaKnown RBP10.92□□□□□ -0.66
LIG1-201ENST00000263274 RAC3P60763 192 aa10.92□□□□□ -0.66
LIG1-201ENST00000263274 IGFBP7Q16270 282 aa10.92□□□□□ -0.66
LIG1-201ENST00000263274 ZNF343Q6P1L6 599 aa10.92□□□□□ -0.66
LIG1-201ENST00000263274 MSI2Q96DH6 328 aaKnown RBP10.92□□□□□ -0.66
LIG1-201ENST00000263274 C14orf144Q96I85 54 aa10.92□□□□□ -0.66
LIG1-201ENST00000263274 ZDHHC8Q9ULC8 765 aa10.92□□□□□ -0.66
LIG1-201ENST00000263274 A0A1B0GWJ7 208 aa10.91□□□□□ -0.66
LIG1-201ENST00000263274 ZFP92A6NM28 416 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms