RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ST3GAL2Q16842 350 aa9.93□□□□□ -0.82
VPS4A-201ENST00000254950 ABHD5Q8WTS1 349 aa9.93□□□□□ -0.82
VPS4A-201ENST00000254950 IL19Q9UHD0 177 aa9.93□□□□□ -0.82
VPS4A-201ENST00000254950 IQCF6A8MYZ5 107 aa9.93□□□□□ -0.82
VPS4A-201ENST00000254950 SMLR1H3BR10 107 aa9.93□□□□□ -0.82
VPS4A-201ENST00000254950 FCGR3AP08637 254 aa9.93□□□□□ -0.82
VPS4A-201ENST00000254950 PLGLAQ15195 96 aa9.93□□□□□ -0.82
VPS4A-201ENST00000254950 TMEM268Q5VZI3 342 aa9.93□□□□□ -0.82
VPS4A-201ENST00000254950 ZNF767PQ75MW2 155 aa9.93□□□□□ -0.82
VPS4A-201ENST00000254950 ZNF665Q9H7R5 613 aa9.93□□□□□ -0.82
VPS4A-201ENST00000254950 PKDREJQ9NTG1 2253 aa9.93□□□□□ -0.82
VPS4A-201ENST00000254950 TP53BP1Q12888 1972 aaPredicted RBP9.93□□□□□ -0.82
VPS4A-201ENST00000254950 MEX3AA1L020 520 aaKnown RBP9.92□□□□□ -0.82
VPS4A-201ENST00000254950 CEBPZOSA8MTT3 80 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 SLC33A1O00400 549 aaPredicted RBP9.92□□□□□ -0.82
VPS4A-201ENST00000254950 IFNA17P01571 189 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 PRDX2P32119 198 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 CEACAM6P40199 344 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 DHODHQ02127 395 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 PPP1R1AQ13522 171 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 SDHCQ99643 169 aaPredicted RBP9.92□□□□□ -0.82
VPS4A-201ENST00000254950 SLC25A31Q9H0C2 315 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 RHOFQ9HBH0 211 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 TAF9BQ9HBM6 251 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 ZNF224Q9NZL3 707 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 FBLN5Q9UBX5 448 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 A0A0D9SG52 128 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 TMPRSS2O15393 492 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 NAT2P11245 290 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 GZMHP20718 246 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 NTF4P34130 210 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 MPV17P39210 176 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 WNT5AP41221 380 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 TMEM255AQ5JRV8 349 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 CALHM1Q8IU99 346 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 GFI1Q99684 422 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 NEURL2Q9BR09 285 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 IGHV1-18A0A0C4DH31 117 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 K7EPK0 472 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 TNFSF12O43508 249 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 SRSF10O75494 262 aaKnown RBP9.92□□□□□ -0.82
VPS4A-201ENST00000254950 APOA2P02652 100 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 CHATP28329 748 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 SSTR2P30874 369 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 LGALS4P56470 323 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 HLA-DRB3P79483 266 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 PLA2G7Q13093 441 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 ZNF154Q13106 437 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 VAX1Q5SQQ9 334 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 ATPAF1Q5TC12 328 aaPredicted RBP9.92□□□□□ -0.82
VPS4A-201ENST00000254950 WDFY1Q8IWB7 410 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 FAM71E2Q8N5Q1 922 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 SLA2Q9H6Q3 261 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 UBTD1Q9HAC8 227 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 RDH8Q9NYR8 311 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 CACNA1DQ01668 2161 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 MFNGO00587 321 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 PDGFAP04085 211 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 RPA2P15927 270 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 FAHD2BQ6P2I3 314 aaPredicted RBP9.92□□□□□ -0.82
VPS4A-201ENST00000254950 MRPL41Q8IXM3 137 aaKnown RBP9.92□□□□□ -0.82
VPS4A-201ENST00000254950 MUC20Q8N307 709 aaPredicted RBP9.92□□□□□ -0.82
VPS4A-201ENST00000254950 LILRB2Q8N423 598 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 OR10V1Q8NGI7 309 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 FAHD2AQ96GK7 314 aa9.92□□□□□ -0.82
VPS4A-201ENST00000254950 CADP27708 2225 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 PPIAL4EA0A075B759 164 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 A0A0G2JNJ9 132 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 C5orf63A6NC05 138 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 OOEPA6NGQ2 149 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 PPIAL4DF5H284 164 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 ST8SIA3O43173 380 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 CTSDP07339 412 aaPredicted RBP9.91□□□□□ -0.82
VPS4A-201ENST00000254950 PPIAL4FP0DN26 164 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 S100A1P23297 94 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 CD80P33681 288 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 BSPH1Q075Z2 132 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 PRR30Q53SZ7 412 aaPredicted RBP9.91□□□□□ -0.82
VPS4A-201ENST00000254950 OR10X1Q8NGY0 326 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 TM2D1Q9BX74 207 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 GON7Q9BXV9 100 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 GFOD1Q9NXC2 390 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 IL36GQ9NZH8 169 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 Q9UFV3 132 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 PPIAL4AQ9Y536 164 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 GTF3C1Q12789 2109 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 IGHV3OR15-7A0A075B7D8 119 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 OR2H2O95918 312 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 OR2B11Q5JQS5 317 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 ST6GALNAC3Q8NDV1 305 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 ASB13Q8WXK3 278 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 SPSB4Q96A44 273 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 GAL3ST2Q9H3Q3 398 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 BOLA1Q9Y3E2 137 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 SLC25A15Q9Y619 301 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 TRAV39A0A0B4J263 110 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 PQLC2LA1A4F0 135 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 K7EM74 188 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 SPDEFO95238 335 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 SFT2D2O95562 160 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms