RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 ARL6IP1Q15041 203 aa12.78□□□□□ -0.36
PTPRA-201ENST00000216877 ZNF658BQ4V348 819 aaPredicted RBP12.78□□□□□ -0.36
PTPRA-201ENST00000216877 SIGLECL1Q8N7X8 197 aa12.78□□□□□ -0.36
PTPRA-201ENST00000216877 OR5AU1Q8NGC0 362 aa12.78□□□□□ -0.36
PTPRA-201ENST00000216877 VSIRQ9H7M9 311 aa12.78□□□□□ -0.36
PTPRA-201ENST00000216877 OR6C3Q9NZP0 311 aa12.78□□□□□ -0.36
PTPRA-201ENST00000216877 CRYM-AS1A6NIL9 109 aa12.78□□□□□ -0.36
PTPRA-201ENST00000216877 DIRC3C9JPN6 131 aa12.78□□□□□ -0.36
PTPRA-201ENST00000216877 NKX2-2O95096 273 aa12.78□□□□□ -0.36
PTPRA-201ENST00000216877 BGLAPP02818 100 aa12.78□□□□□ -0.36
PTPRA-201ENST00000216877 CTSDP07339 412 aaPredicted RBP12.78□□□□□ -0.36
PTPRA-201ENST00000216877 PFN1P07737 140 aaKnown RBP12.78□□□□□ -0.36
PTPRA-201ENST00000216877 NTF3P20783 257 aa12.78□□□□□ -0.36
PTPRA-201ENST00000216877 FBLN7Q53RD9 439 aa12.78□□□□□ -0.36
PTPRA-201ENST00000216877 D2HGDHQ8N465 521 aa12.78□□□□□ -0.36
PTPRA-201ENST00000216877 COL4A3Q01955 1670 aa12.77□□□□□ -0.36
PTPRA-201ENST00000216877 A0A1B0GW64 132 aa12.77□□□□□ -0.36
PTPRA-201ENST00000216877 TMEM14DPA8MWL7 114 aa12.77□□□□□ -0.36
PTPRA-201ENST00000216877 TMEM238C9JI98 176 aa12.77□□□□□ -0.36
PTPRA-201ENST00000216877 RAB29O14966 203 aa12.77□□□□□ -0.36
PTPRA-201ENST00000216877 SPINK4O60575 86 aa12.77□□□□□ -0.36
PTPRA-201ENST00000216877 OPN1LWP04000 364 aa12.77□□□□□ -0.36
PTPRA-201ENST00000216877 TDGF1P13385 188 aa12.77□□□□□ -0.36
PTPRA-201ENST00000216877 RABIFP47224 123 aa12.77□□□□□ -0.36
PTPRA-201ENST00000216877 TMEM108Q6UXF1 575 aa12.77□□□□□ -0.36
PTPRA-201ENST00000216877 C1QL2Q7Z5L3 287 aa12.77□□□□□ -0.36
PTPRA-201ENST00000216877 BET1LQ9NYM9 111 aa12.77□□□□□ -0.36
PTPRA-201ENST00000216877 NPIPA5E9PKD4 350 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 FCGR2AP12318 317 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 PLA2G5P39877 138 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 CCR2P41597 374 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 RPS15AP62244 130 aaKnown RBP12.77□□□□□ -0.37
PTPRA-201ENST00000216877 CARD17Q5XLA6 110 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 LIAT1Q6ZQX7 453 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 LHFPL1Q86WI0 220 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 CORO2AQ92828 525 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 TBL1XR1Q9BZK7 514 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 IL21Q9HBE4 155 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 GPR35Q9HC97 309 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 MED29Q9NX70 200 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 NPIPA1Q9UND3 350 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 DIDO1Q9BTC0 2240 aaKnown RBP12.77□□□□□ -0.37
PTPRA-201ENST00000216877 ADAM20O43506 726 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 CHST1O43916 411 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 CDC34P49427 236 aaPredicted RBP12.77□□□□□ -0.37
PTPRA-201ENST00000216877 KCNMB1Q16558 191 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 C9orf50Q5SZB4 431 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 ZNF468Q5VIY5 522 aaPredicted RBP12.77□□□□□ -0.37
PTPRA-201ENST00000216877 LINC00114Q6XXX2 140 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 VN1R3Q9BXE9 311 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 G6PC2Q9NQR9 355 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 MBNL1Q9NR56 388 aaKnown RBP12.77□□□□□ -0.37
PTPRA-201ENST00000216877 GLRX2Q9NS18 164 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 ZNF319Q9P2F9 582 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 WIPI2Q9Y4P8 454 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 CLDN16Q9Y5I7 305 aa12.77□□□□□ -0.37
PTPRA-201ENST00000216877 NRG2O14511 850 aaPredicted RBP12.76□□□□□ -0.37
PTPRA-201ENST00000216877 GDF9O60383 454 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 CDS2O95674 445 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 TTRP02766 147 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 SLC6A8P48029 635 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 PRSS12P56730 875 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 PMP22Q01453 160 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 BCL2L2Q92843 193 aaPredicted RBP12.76□□□□□ -0.37
PTPRA-201ENST00000216877 LOXL4Q96JB6 756 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 RNF2Q99496 336 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 RBM24Q9BX46 236 aaKnown RBP12.76□□□□□ -0.37
PTPRA-201ENST00000216877 MCTS1Q9ULC4 181 aaKnown RBP12.76□□□□□ -0.37
PTPRA-201ENST00000216877 SHISA7A6NL88 538 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 ANGPTL7O43827 346 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 HLA-DOBP13765 273 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 EGR4Q05215 589 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 PSMF1Q92530 271 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 SLAMF6Q96DU3 332 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 RAB11FIP5Q9BXF6 653 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 PECRQ9BY49 303 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 NXF5Q9H1B4 397 aaKnown RBP12.76□□□□□ -0.37
PTPRA-201ENST00000216877 PCED1AQ9H1Q7 454 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 TICRRQ7Z2Z1 1910 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 LILRA1O75019 489 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 SHHQ15465 462 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 Q6ZWC4 215 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 WFDC8Q8IUA0 241 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 BCORP1Q8N888 145 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 SLC38A9Q8NBW4 561 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 MOB3AQ96BX8 217 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 IL19Q9UHD0 177 aa12.76□□□□□ -0.37
PTPRA-201ENST00000216877 A0A1W2PP55 124 aa12.75□□□□□ -0.37
PTPRA-201ENST00000216877 HSPB2A8KAH6 182 aa12.75□□□□□ -0.37
PTPRA-201ENST00000216877 H0YGG7 62 aa12.75□□□□□ -0.37
PTPRA-201ENST00000216877 IAPPP10997 89 aa12.75□□□□□ -0.37
PTPRA-201ENST00000216877 PEBP1P30086 187 aaKnown RBP12.75□□□□□ -0.37
PTPRA-201ENST00000216877 HSPB2Q16082 182 aa12.75□□□□□ -0.37
PTPRA-201ENST00000216877 EMC4Q5J8M3 183 aa12.75□□□□□ -0.37
PTPRA-201ENST00000216877 FFAR4Q5NUL3 377 aa12.75□□□□□ -0.37
PTPRA-201ENST00000216877 FDX2Q6P4F2 183 aa12.75□□□□□ -0.37
PTPRA-201ENST00000216877 NAT6Q93015 286 aa12.75□□□□□ -0.37
PTPRA-201ENST00000216877 C8orf44Q96CB5 159 aa12.75□□□□□ -0.37
PTPRA-201ENST00000216877 GPX7Q96SL4 187 aaPredicted RBP12.75□□□□□ -0.37
PTPRA-201ENST00000216877 MYO7BQ6PIF6 2116 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms