RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 CSRNP2Q9H175 543 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 ZFYVE9O95405 1425 aa5.26□□□□□ -1.57
SCN1A-220ENST00000641603 PFDN1O60925 122 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 CCDC96Q2M329 555 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 PDCD7Q8N8D1 485 aaKnown RBP5.25□□□□□ -1.57
SCN1A-220ENST00000641603 TRIM58Q8NG06 486 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 N4BP2L2Q92802 583 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-220ENST00000641603 ZNF287Q9HBT7 754 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 IKBKGQ9Y6K9 419 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 A0A087WZG4 1122 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 TCP1P17987 556 aaKnown RBP5.25□□□□□ -1.57
SCN1A-220ENST00000641603 MRPS25P82663 173 aaKnown RBP5.25□□□□□ -1.57
SCN1A-220ENST00000641603 ANKRD62A6NC57 917 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 CFAP221Q4G0U5 840 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 EMBQ6PCB8 327 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 IQCA1Q86XH1 822 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 ZFP91Q96JP5 570 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-220ENST00000641603 SPTLC2O15270 562 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 HNRNPCL1O60812 293 aaKnown RBP5.25□□□□□ -1.57
SCN1A-220ENST00000641603 PNMA6AP0CW24 399 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-220ENST00000641603 PRPF40BQ6NWY9 871 aaKnown RBP5.25□□□□□ -1.57
SCN1A-220ENST00000641603 STXBP4Q6ZWJ1 553 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 SRGAP1Q7Z6B7 1085 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 FNBP4Q8N3X1 1017 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-220ENST00000641603 CCDC113Q9H0I3 377 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 TXLNGQ9NUQ3 528 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 TRIM21P19474 475 aaKnown RBP5.25□□□□□ -1.57
SCN1A-220ENST00000641603 EPHB4P54760 987 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 ISM2Q6H9L7 571 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 BCAS4Q8TDM0 211 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 TSC22D3Q99576 134 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 FERMT1Q9BQL6 677 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 EIF2AQ9BY44 585 aaKnown RBP5.25□□□□□ -1.57
SCN1A-220ENST00000641603 TANGO6Q9C0B7 1094 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 ST5P78524 1137 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 TDRD12Q587J7 1177 aaKnown RBP5.25□□□□□ -1.57
SCN1A-220ENST00000641603 MAIP1Q8WWC4 291 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 CXorf56Q9H5V9 222 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 PAIP2BQ9ULR5 123 aaKnown RBP5.25□□□□□ -1.57
SCN1A-220ENST00000641603 EPRSP07814 1512 aaKnown RBP5.25□□□□□ -1.57
SCN1A-220ENST00000641603 MSH6P52701 1360 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 ADGRL1O94910 1474 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 NME8Q8N427 588 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 ANKRD7Q92527 254 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 A0A1W2PRG0 241 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 MAP7D1Q3KQU3 841 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 CCDC62Q6P9F0 684 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 PIP4K2CQ8TBX8 421 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 ZC3H15Q8WU90 426 aaKnown RBP5.25□□□□□ -1.57
SCN1A-220ENST00000641603 MAP3K5Q99683 1374 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 GLE1Q53GS7 698 aaKnown RBP5.25□□□□□ -1.57
SCN1A-220ENST00000641603 IKBKBO14920 756 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 HNRNPH2P55795 449 aaKnown RBP5.25□□□□□ -1.57
SCN1A-220ENST00000641603 NCBP1Q09161 790 aaKnown RBP5.25□□□□□ -1.57
SCN1A-220ENST00000641603 MUM1Q2TAK8 710 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 LARP1Q6PKG0 1096 aaKnown RBP5.25□□□□□ -1.57
SCN1A-220ENST00000641603 USP37Q86T82 979 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 MPNDQ8N594 471 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 LEO1Q8WVC0 666 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-220ENST00000641603 MCUR1Q96AQ8 359 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 CDC23Q9UJX2 597 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 GAPVD1Q14C86 1478 aa5.25□□□□□ -1.57
SCN1A-220ENST00000641603 COL17A1Q9UMD9 1497 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-220ENST00000641603 TEX9Q8N6V9 391 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 RAB17Q9H0T7 212 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 KLHL14Q9P2G3 628 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 SYNJ2O15056 1496 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 PDE1AP54750 535 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 FERMT3Q86UX7 667 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 ELL2O00472 640 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-220ENST00000641603 PRC1O43663 620 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 CEBPZQ03701 1054 aaKnown RBP5.24□□□□□ -1.57
SCN1A-220ENST00000641603 SUGP1Q8IWZ8 645 aaKnown RBP5.24□□□□□ -1.57
SCN1A-220ENST00000641603 CCDC42Q96M95 316 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 CALCOCO2Q13137 446 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 TMEM266Q2M3C6 531 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 LRRC8AQ8IWT6 810 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 MIS18AQ9NYP9 233 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 RIPOR2Q9Y4F9 1068 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 GCFC2P16383 781 aaKnown RBP5.24□□□□□ -1.57
SCN1A-220ENST00000641603 LONRF2Q1L5Z9 754 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 IFNKQ9P0W0 207 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 IFT140Q96RY7 1462 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 CCDC160A6NGH7 325 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 FERP16591 822 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 CCDC84Q86UT8 332 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-220ENST00000641603 NEK1Q96PY6 1258 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 TSPYL2Q9H2G4 693 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-220ENST00000641603 EIF3CLB5ME19 914 aaKnown RBP5.24□□□□□ -1.57
SCN1A-220ENST00000641603 ZBTB16Q05516 673 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 ZNF569Q5MCW4 686 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 BICDL1Q6ZP65 573 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 EIF3CQ99613 913 aaKnown RBP5.24□□□□□ -1.57
SCN1A-220ENST00000641603 NSD3Q9BZ95 1437 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 WDR78Q5VTH9 848 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 SHANK2Q9UPX8 1470 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 SLC4A2P04920 1241 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 IDEP14735 1019 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 LMNB1P20700 586 aa5.24□□□□□ -1.57
SCN1A-220ENST00000641603 NLRP12P59046 1061 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms