RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 CARD10Q9BWT7 1032 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 RAD54L2Q9Y4B4 1467 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 RANBP6O60518 1105 aaKnown RBP6.73□□□□□ -1.33
SCN1A-212ENST00000636194 HS1BP3Q53T59 392 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 TRAIPQ9BWF2 469 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 KAT14Q9H8E8 782 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 SEL1L2Q5TEA6 688 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 FAM186BQ8IYM0 893 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 BZW2Q9Y6E2 419 aaKnown RBP6.73□□□□□ -1.33
SCN1A-212ENST00000636194 SPOUT1Q5T280 376 aaKnown RBP6.73□□□□□ -1.33
SCN1A-212ENST00000636194 HS2ST1Q7LGA3 356 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 PROCA1Q8NCQ7 364 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-212ENST00000636194 CACTINQ8WUQ7 758 aaKnown RBP6.73□□□□□ -1.33
SCN1A-212ENST00000636194 SRRTQ9BXP5 876 aaKnown RBP6.73□□□□□ -1.33
SCN1A-212ENST00000636194 H0YC42 278 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 ESCO1Q5FWF5 840 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 CCPG1Q9ULG6 757 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 A0A1B0GW55 424 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 DUX4L2P0CJ85 424 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 DUX4L3P0CJ86 424 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 DUX4L4P0CJ87 422 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 DUX4L5P0CJ88 424 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 DUX4L6P0CJ89 424 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 DUX4L7P0CJ90 424 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 UBE3BQ7Z3V4 1068 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 EPS15L1Q9UBC2 864 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 DUX4Q9UBX2 424 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 SLC13A4Q9UKG4 626 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 ATAD2Q6PL18 1390 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 TNIKQ9UKE5 1360 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 NFKBIAP25963 317 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 PHBP35232 272 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 IRX3P78415 501 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-212ENST00000636194 NRBF2Q96F24 287 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 SIL1Q9H173 461 aa6.73□□□□□ -1.33
SCN1A-212ENST00000636194 TUBB4AP04350 444 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 STAT6P42226 847 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 NOP14P78316 857 aaKnown RBP6.72□□□□□ -1.33
SCN1A-212ENST00000636194 NBPF6Q5VWK0 638 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 NBPF4Q96M43 638 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 CDC5LQ99459 802 aaKnown RBP6.72□□□□□ -1.33
SCN1A-212ENST00000636194 TRIM56Q9BRZ2 755 aaKnown RBP6.72□□□□□ -1.33
SCN1A-212ENST00000636194 NEUROG2Q9H2A3 272 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 KRT87PA6NCN2 255 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 ACTN4O43707 911 aaKnown RBP6.72□□□□□ -1.33
SCN1A-212ENST00000636194 FAM180AQ6UWF9 173 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 UBL4BQ8N7F7 174 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 CCDC26Q8TAB7 109 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 TTC1Q99614 292 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 NUTM2BA6NNL0 878 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-212ENST00000636194 NUTM2EB1AL46 878 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-212ENST00000636194 KRT86O43790 486 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 IFNA8P32881 189 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 VPS41P49754 854 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 IFIT5Q13325 482 aaKnown RBP6.72□□□□□ -1.33
SCN1A-212ENST00000636194 NUTM2AQ8IVF1 878 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-212ENST00000636194 HOOK2Q96ED9 719 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 TRIM47Q96LD4 638 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 CUX1P39880 1505 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 CUX2O14529 1486 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 GIGYF1O75420 1035 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-212ENST00000636194 OATP04181 439 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 MYL6BP14649 208 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 IDEP14735 1019 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 VAV2P52735 878 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 WHAMMP3Q1A5X7 153 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 ESPNB1AK53 854 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 LUC7L3O95232 432 aaKnown RBP6.72□□□□□ -1.33
SCN1A-212ENST00000636194 P4HA1P13674 534 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 APLFQ8IW19 511 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-212ENST00000636194 HYOU1Q9Y4L1 999 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 STK24Q9Y6E0 443 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 K7ELQ4 463 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-212ENST00000636194 MX2P20592 715 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 DDX54Q8TDD1 881 aaKnown RBP6.72□□□□□ -1.33
SCN1A-212ENST00000636194 PRDM11Q9NQV5 511 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 BTBD11A6QL63 1104 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 ARHGEF6Q15052 776 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 HAUS1Q96CS2 278 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 CHMP6Q96FZ7 201 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 SELENOSQ9BQE4 189 aa6.72□□□□□ -1.33
SCN1A-212ENST00000636194 SKOR1P84550 965 aa6.71□□□□□ -1.33
SCN1A-212ENST00000636194 SPAG1Q07617 926 aa6.71□□□□□ -1.33
SCN1A-212ENST00000636194 CCDC152Q4G0S7 254 aa6.71□□□□□ -1.33
SCN1A-212ENST00000636194 LIN9Q5TKA1 542 aa6.71□□□□□ -1.33
SCN1A-212ENST00000636194 NR1H4Q96RI1 486 aaPredicted RBP6.71□□□□□ -1.33
SCN1A-212ENST00000636194 USP47Q96K76 1375 aa6.71□□□□□ -1.33
SCN1A-212ENST00000636194 TMEM247A6NEH6 219 aa6.71□□□□□ -1.33
SCN1A-212ENST00000636194 PDZD8Q8NEN9 1154 aa6.71□□□□□ -1.33
SCN1A-212ENST00000636194 JAKMIP1Q96N16 626 aaKnown RBP6.71□□□□□ -1.33
SCN1A-212ENST00000636194 SLC5A4Q9NY91 659 aa6.71□□□□□ -1.33
SCN1A-212ENST00000636194 POLA1P09884 1462 aaPredicted RBP6.71□□□□□ -1.34
SCN1A-212ENST00000636194 SYCE3A1L190 88 aa6.71□□□□□ -1.34
SCN1A-212ENST00000636194 ZNF213O14771 459 aa6.71□□□□□ -1.34
SCN1A-212ENST00000636194 RPL13P26373 211 aaKnown RBP6.71□□□□□ -1.34
SCN1A-212ENST00000636194 GNAQP50148 359 aa6.71□□□□□ -1.34
SCN1A-212ENST00000636194 GRIN1Q05586 938 aa6.71□□□□□ -1.34
SCN1A-212ENST00000636194 PPP2R5CQ13362 524 aa6.71□□□□□ -1.34
SCN1A-212ENST00000636194 SNW1Q13573 536 aaKnown RBP6.71□□□□□ -1.34
SCN1A-212ENST00000636194 POTEDQ86YR6 584 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms