RNA–Protein interactions for RNA: ENST00000622183.1

CPNE3-213, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 156 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-213ENST00000622183 SMG9Q9H0W8 520 aaKnown RBP7.66□□□□□ -1.18
CPNE3-213ENST00000622183 CLEC4MQ9H2X3 399 aaPredicted RBP7.66□□□□□ -1.18
CPNE3-213ENST00000622183 KCNQ5Q9NR82 932 aa7.66□□□□□ -1.18
CPNE3-213ENST00000622183 FRRS1LQ9P0K9 344 aa7.66□□□□□ -1.18
CPNE3-213ENST00000622183 SOX13Q9UN79 622 aa7.66□□□□□ -1.18
CPNE3-213ENST00000622183 ELOA3CA0A087WX78 387 aaPredicted RBP7.65□□□□□ -1.18
CPNE3-213ENST00000622183 ELOA3DA6NLF2 546 aaPredicted RBP7.65□□□□□ -1.18
CPNE3-213ENST00000622183 NEURL1BA8MQ27 555 aa7.65□□□□□ -1.18
CPNE3-213ENST00000622183 DNAJA1P31689 397 aaKnown RBP7.65□□□□□ -1.18
CPNE3-213ENST00000622183 EIF4A3P38919 411 aaKnown RBP7.65□□□□□ -1.18
CPNE3-213ENST00000622183 MAP3K11Q16584 847 aa7.65□□□□□ -1.18
CPNE3-213ENST00000622183 ELOA3BQ3SY89 546 aa7.65□□□□□ -1.18
CPNE3-213ENST00000622183 VN1R5Q7Z5H4 357 aa7.65□□□□□ -1.18
CPNE3-213ENST00000622183 KIAA0825Q8IV33 1275 aa7.65□□□□□ -1.18
CPNE3-213ENST00000622183 GPR161Q8N6U8 529 aaKnown RBP7.65□□□□□ -1.18
CPNE3-213ENST00000622183 ELOA3Q8NG57 546 aa7.65□□□□□ -1.18
CPNE3-213ENST00000622183 RASGRP4Q8TDF6 673 aa7.65□□□□□ -1.18
CPNE3-213ENST00000622183 TTC9Q92623 222 aa7.65□□□□□ -1.18
CPNE3-213ENST00000622183 ARMC5Q96C12 935 aa7.65□□□□□ -1.18
CPNE3-213ENST00000622183 LPIN3Q9BQK8 851 aa7.65□□□□□ -1.18
CPNE3-213ENST00000622183 ADAM19Q9H013 955 aa7.65□□□□□ -1.18
CPNE3-213ENST00000622183 TMEM39AQ9NV64 488 aa7.65□□□□□ -1.18
CPNE3-213ENST00000622183 MINDY4BA8MYZ0 360 aa7.64□□□□□ -1.19
CPNE3-213ENST00000622183 F6X3S4 739 aa7.64□□□□□ -1.19
CPNE3-213ENST00000622183 B3GALT4O96024 378 aa7.64□□□□□ -1.19
CPNE3-213ENST00000622183 ATP2B1P20020 1258 aa7.64□□□□□ -1.19
CPNE3-213ENST00000622183 RPS26P62854 115 aaKnown RBP7.64□□□□□ -1.19
CPNE3-213ENST00000622183 PPP2R3AQ06190 1150 aa7.64□□□□□ -1.19
CPNE3-213ENST00000622183 PCDH1Q08174 1060 aa7.64□□□□□ -1.19
CPNE3-213ENST00000622183 AGMOQ6ZNB7 445 aa7.64□□□□□ -1.19
CPNE3-213ENST00000622183 SPATA32Q96LK8 384 aa7.64□□□□□ -1.19
CPNE3-213ENST00000622183 GPN3Q9UHW5 284 aaPredicted RBP7.64□□□□□ -1.19
CPNE3-213ENST00000622183 GGA1Q9UJY5 639 aa7.64□□□□□ -1.19
CPNE3-213ENST00000622183 TRIM33Q9UPN9 1127 aa7.64□□□□□ -1.19
CPNE3-213ENST00000622183 IGF1RP08069 1367 aa7.63□□□□□ -1.19
CPNE3-213ENST00000622183 PAGE1O75459 146 aa7.63□□□□□ -1.19
CPNE3-213ENST00000622183 ATF4P18848 351 aaPredicted RBP7.63□□□□□ -1.19
CPNE3-213ENST00000622183 TTBK2Q6IQ55 1244 aa7.63□□□□□ -1.19
CPNE3-213ENST00000622183 PSAPL1Q6NUJ1 521 aa7.63□□□□□ -1.19
CPNE3-213ENST00000622183 ADAMTSL4Q6UY14 1074 aa7.63□□□□□ -1.19
CPNE3-213ENST00000622183 SLCO4C1Q6ZQN7 724 aa7.63□□□□□ -1.19
CPNE3-213ENST00000622183 GOLGA6L1Q8N7Z2 621 aa7.63□□□□□ -1.19
CPNE3-213ENST00000622183 ZNF296Q8WUU4 475 aaPredicted RBP7.63□□□□□ -1.19
CPNE3-213ENST00000622183 TLR6Q9Y2C9 796 aa7.63□□□□□ -1.19
CPNE3-213ENST00000622183 FGRP09769 529 aa7.62□□□□□ -1.19
CPNE3-213ENST00000622183 LMNB2Q03252 620 aa7.62□□□□□ -1.19
CPNE3-213ENST00000622183 ZNF423Q2M1K9 1284 aa7.62□□□□□ -1.19
CPNE3-213ENST00000622183 RNFT1Q5M7Z0 435 aa7.62□□□□□ -1.19
CPNE3-213ENST00000622183 PCNX4Q63HM2 1172 aa7.62□□□□□ -1.19
CPNE3-213ENST00000622183 FBXL19Q6PCT2 694 aa7.62□□□□□ -1.19
CPNE3-213ENST00000622183 CACTIN-AS1Q8N1I8 211 aa7.62□□□□□ -1.19
CPNE3-213ENST00000622183 LACRTQ9GZZ8 138 aa7.62□□□□□ -1.19
CPNE3-213ENST00000622183 GDF2Q9UK05 429 aaPredicted RBP7.62□□□□□ -1.19
CPNE3-213ENST00000622183 SHROOM4Q9ULL8 1493 aa7.62□□□□□ -1.19
CPNE3-213ENST00000622183 FAM177BA6PVY3 158 aa7.61□□□□□ -1.19
CPNE3-213ENST00000622183 GREM1O60565 184 aa7.61□□□□□ -1.19
CPNE3-213ENST00000622183 PF4P02776 101 aa7.61□□□□□ -1.19
CPNE3-213ENST00000622183 TFE3P19532 575 aaPredicted RBP7.61□□□□□ -1.19
CPNE3-213ENST00000622183 GARTP22102 1010 aa7.61□□□□□ -1.19
CPNE3-213ENST00000622183 ALAS2P22557 587 aa7.61□□□□□ -1.19
CPNE3-213ENST00000622183 CAMK2GQ13555 558 aaPredicted RBP7.61□□□□□ -1.19
CPNE3-213ENST00000622183 MCF2L2Q86YR7 1114 aa7.61□□□□□ -1.19
CPNE3-213ENST00000622183 SEC16BQ96JE7 1060 aa7.61□□□□□ -1.19
CPNE3-213ENST00000622183 NT5C1AQ9BXI3 368 aa7.61□□□□□ -1.19
CPNE3-213ENST00000622183 COL25A1Q9BXS0 654 aaPredicted RBP7.61□□□□□ -1.19
CPNE3-213ENST00000622183 SAMM50Q9Y512 469 aa7.61□□□□□ -1.19
CPNE3-213ENST00000622183 SUPT16HQ9Y5B9 1047 aaKnown RBP7.61□□□□□ -1.19
CPNE3-213ENST00000622183 RGS9O75916 674 aaPredicted RBP7.6□□□□□ -1.19
CPNE3-213ENST00000622183 ESRRAP11474 423 aaPredicted RBP7.6□□□□□ -1.19
CPNE3-213ENST00000622183 CDC27P30260 824 aa7.6□□□□□ -1.19
CPNE3-213ENST00000622183 FAM160A1Q05DH4 1040 aa7.6□□□□□ -1.19
CPNE3-213ENST00000622183 CCDC84Q86UT8 332 aaPredicted RBP7.6□□□□□ -1.19
CPNE3-213ENST00000622183 DHX38Q92620 1227 aaKnown RBP7.6□□□□□ -1.19
CPNE3-213ENST00000622183 EAF1Q96JC9 268 aaPredicted RBP7.6□□□□□ -1.19
CPNE3-213ENST00000622183 STARD13Q9Y3M8 1113 aa7.6□□□□□ -1.19
CPNE3-213ENST00000622183 EPXP11678 715 aa7.59□□□□□ -1.19
CPNE3-213ENST00000622183 EPHA1P21709 976 aa7.59□□□□□ -1.19
CPNE3-213ENST00000622183 NME2P22392 152 aa7.59□□□□□ -1.19
CPNE3-213ENST00000622183 GTF2F1P35269 517 aaKnown RBP eCLIP7.59□□□□□ -1.19
CPNE3-213ENST00000622183 ZNF157P51786 506 aaPredicted RBP7.59□□□□□ -1.19
CPNE3-213ENST00000622183 CABP4P57796 275 aa7.59□□□□□ -1.19
CPNE3-213ENST00000622183 SRSF11Q05519 484 aaKnown RBP7.59□□□□□ -1.19
CPNE3-213ENST00000622183 IKBKEQ14164 716 aa7.59□□□□□ -1.19
CPNE3-213ENST00000622183 SNAP47Q5SQN1 464 aa7.59□□□□□ -1.19
CPNE3-213ENST00000622183 GDF6Q6KF10 455 aaPredicted RBP7.59□□□□□ -1.19
CPNE3-213ENST00000622183 TRIM42Q8IWZ5 723 aa7.59□□□□□ -1.19
CPNE3-213ENST00000622183 GOLM1Q8NBJ4 401 aa7.59□□□□□ -1.19
CPNE3-213ENST00000622183 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.59□□□□□ -1.19
CPNE3-213ENST00000622183 SH2B1Q9NRF2 756 aaPredicted RBP7.59□□□□□ -1.19
CPNE3-213ENST00000622183 H3BRJ5 948 aa7.58□□□□□ -1.2
CPNE3-213ENST00000622183 BMP6P22004 513 aa7.58□□□□□ -1.2
CPNE3-213ENST00000622183 NFX1Q12986 1120 aaKnown RBP7.58□□□□□ -1.2
CPNE3-213ENST00000622183 COL9A2Q14055 689 aaPredicted RBP7.58□□□□□ -1.2
CPNE3-213ENST00000622183 GRIK5Q16478 980 aa7.58□□□□□ -1.2
CPNE3-213ENST00000622183 C20orf204Q6ZNR8 217 aa7.58□□□□□ -1.2
CPNE3-213ENST00000622183 FAM196AQ6ZSG2 479 aa7.58□□□□□ -1.2
CPNE3-213ENST00000622183 SULF2Q8IWU5 870 aa7.58□□□□□ -1.2
CPNE3-213ENST00000622183 DDX54Q8TDD1 881 aaKnown RBP7.58□□□□□ -1.2
CPNE3-213ENST00000622183 NUDT8Q8WV74 236 aa7.58□□□□□ -1.2
CPNE3-213ENST00000622183 DNAJC2Q99543 621 aaKnown RBP7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms