RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 BCAMP50895 628 aa12.3□□□□□ -0.44
UPF1-213ENST00000601981 TTC39AQ5SRH9 613 aa12.3□□□□□ -0.44
UPF1-213ENST00000601981 STRIP1Q5VSL9 837 aa12.3□□□□□ -0.44
UPF1-213ENST00000601981 TTLL5Q6EMB2 1281 aa12.3□□□□□ -0.44
UPF1-213ENST00000601981 TBC1D22AQ8WUA7 517 aa12.3□□□□□ -0.44
UPF1-213ENST00000601981 GPATCH3Q96I76 525 aa12.3□□□□□ -0.44
UPF1-213ENST00000601981 IL1RAPL2Q9NP60 686 aa12.3□□□□□ -0.44
UPF1-213ENST00000601981 DENND2AQ9ULE3 1009 aa12.3□□□□□ -0.44
UPF1-213ENST00000601981 ZNF646O15015 1829 aaPredicted RBP12.3□□□□□ -0.44
UPF1-213ENST00000601981 PSMD14O00487 310 aa12.29□□□□□ -0.44
UPF1-213ENST00000601981 ADORA1P30542 326 aa12.29□□□□□ -0.44
UPF1-213ENST00000601981 GTF2IP78347 998 aa12.29□□□□□ -0.44
UPF1-213ENST00000601981 CCDC102BQ68D86 513 aa12.29□□□□□ -0.44
UPF1-213ENST00000601981 AGBL3Q8NEM8 1001 aa12.29□□□□□ -0.44
UPF1-213ENST00000601981 TDRD7Q8NHU6 1098 aaKnown RBP12.29□□□□□ -0.44
UPF1-213ENST00000601981 BCL11AQ9H165 835 aa12.29□□□□□ -0.44
UPF1-213ENST00000601981 ZBTB22O15209 634 aa12.28□□□□□ -0.44
UPF1-213ENST00000601981 DDNO94850 711 aaPredicted RBP12.28□□□□□ -0.44
UPF1-213ENST00000601981 VIL1P09327 827 aaKnown RBP12.28□□□□□ -0.44
UPF1-213ENST00000601981 PHKA1P46020 1223 aa12.28□□□□□ -0.44
UPF1-213ENST00000601981 MMP14P50281 582 aa12.28□□□□□ -0.44
UPF1-213ENST00000601981 FKBP1AP62942 108 aaKnown RBP12.28□□□□□ -0.44
UPF1-213ENST00000601981 IFFO2Q5TF58 517 aa12.28□□□□□ -0.44
UPF1-213ENST00000601981 RSBN1LQ6PCB5 846 aaPredicted RBP12.28□□□□□ -0.44
UPF1-213ENST00000601981 ZGPATQ8N5A5 531 aaKnown RBP12.28□□□□□ -0.44
UPF1-213ENST00000601981 WDR66Q8TBY9 1149 aa12.28□□□□□ -0.44
UPF1-213ENST00000601981 EAF2Q96CJ1 260 aaPredicted RBP12.28□□□□□ -0.44
UPF1-213ENST00000601981 L3MBTL3Q96JM7 780 aaPredicted RBP12.28□□□□□ -0.44
UPF1-213ENST00000601981 CCDC8Q9H0W5 538 aaPredicted RBP12.28□□□□□ -0.44
UPF1-213ENST00000601981 FAM205AQ6ZU69 1335 aa12.28□□□□□ -0.44
UPF1-213ENST00000601981 AKAP11Q9UKA4 1901 aa12.27□□□□□ -0.44
UPF1-213ENST00000601981 ARID4AP29374 1257 aaPredicted RBP12.27□□□□□ -0.45
UPF1-213ENST00000601981 CHAF1AQ13111 956 aaPredicted RBP12.27□□□□□ -0.45
UPF1-213ENST00000601981 BMP2KLQ5H9B9 411 aa12.27□□□□□ -0.45
UPF1-213ENST00000601981 DACT2Q5SW24 774 aa12.27□□□□□ -0.45
UPF1-213ENST00000601981 OGFOD1Q8N543 542 aa12.27□□□□□ -0.45
UPF1-213ENST00000601981 ZNF526Q8TF50 670 aaPredicted RBP12.27□□□□□ -0.45
UPF1-213ENST00000601981 DPF2Q92785 391 aa12.27□□□□□ -0.45
UPF1-213ENST00000601981 DBNDD2Q9BQY9 259 aa12.27□□□□□ -0.45
UPF1-213ENST00000601981 HACL1Q9UJ83 578 aa12.27□□□□□ -0.45
UPF1-213ENST00000601981 DBNLQ9UJU6 430 aaKnown RBP12.27□□□□□ -0.45
UPF1-213ENST00000601981 HDAC9Q9UKV0 1011 aa12.27□□□□□ -0.45
UPF1-213ENST00000601981 IQSEC3Q9UPP2 1182 aaPredicted RBP12.27□□□□□ -0.45
UPF1-213ENST00000601981 PDS5AQ29RF7 1337 aaKnown RBP12.27□□□□□ -0.45
UPF1-213ENST00000601981 H7C1D1 291 aa12.26□□□□□ -0.45
UPF1-213ENST00000601981 VEGFAP15692 232 aaPredicted RBP12.26□□□□□ -0.45
UPF1-213ENST00000601981 GMPSP49915 693 aaPredicted RBP12.26□□□□□ -0.45
UPF1-213ENST00000601981 MFSD14BQ5SR56 506 aa12.26□□□□□ -0.45
UPF1-213ENST00000601981 C16orf71Q8IYS4 520 aaPredicted RBP12.26□□□□□ -0.45
UPF1-213ENST00000601981 ZNF512BQ96KM6 892 aaPredicted RBP12.26□□□□□ -0.45
UPF1-213ENST00000601981 KCNQ5Q9NR82 932 aa12.26□□□□□ -0.45
UPF1-213ENST00000601981 SUGT1Q9Y2Z0 365 aa12.26□□□□□ -0.45
UPF1-213ENST00000601981 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.26□□□□□ -0.45
UPF1-213ENST00000601981 MAST3O60307 1309 aa12.26□□□□□ -0.45
UPF1-213ENST00000601981 SMARCA5O60264 1052 aaPredicted RBP12.25□□□□□ -0.45
UPF1-213ENST00000601981 HSPA6P17066 643 aa12.25□□□□□ -0.45
UPF1-213ENST00000601981 ANP32AP39687 249 aaKnown RBP12.25□□□□□ -0.45
UPF1-213ENST00000601981 RASGRF1Q13972 1273 aa12.25□□□□□ -0.45
UPF1-213ENST00000601981 SPTY2D1Q68D10 685 aaPredicted RBP12.25□□□□□ -0.45
UPF1-213ENST00000601981 PLEKHM2Q8IWE5 1019 aa12.25□□□□□ -0.45
UPF1-213ENST00000601981 SPATA5Q8NB90 893 aa12.25□□□□□ -0.45
UPF1-213ENST00000601981 GPRC5DQ9NZD1 345 aa12.25□□□□□ -0.45
UPF1-213ENST00000601981 ECM29Q5VYK3 1845 aa12.25□□□□□ -0.45
UPF1-213ENST00000601981 MYH2Q9UKX2 1941 aa12.25□□□□□ -0.45
UPF1-213ENST00000601981 ERC2O15083 957 aa12.24□□□□□ -0.45
UPF1-213ENST00000601981 USP17L8P0C7I0 530 aa12.24□□□□□ -0.45
UPF1-213ENST00000601981 MYH7P12883 1935 aa12.24□□□□□ -0.45
UPF1-213ENST00000601981 SCNN1DP51172 638 aa12.24□□□□□ -0.45
UPF1-213ENST00000601981 MAST2Q6P0Q8 1798 aa12.24□□□□□ -0.45
UPF1-213ENST00000601981 PNMA8AQ86V59 439 aaPredicted RBP12.24□□□□□ -0.45
UPF1-213ENST00000601981 MICALL2Q8IY33 904 aa12.24□□□□□ -0.45
UPF1-213ENST00000601981 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.24□□□□□ -0.45
UPF1-213ENST00000601981 RRAGCQ9HB90 399 aa12.24□□□□□ -0.45
UPF1-213ENST00000601981 SALL1Q9NSC2 1324 aa12.24□□□□□ -0.45
UPF1-213ENST00000601981 ECHDC1Q9NTX5 307 aa12.24□□□□□ -0.45
UPF1-213ENST00000601981 TLR7Q9NYK1 1049 aaKnown RBP12.24□□□□□ -0.45
UPF1-213ENST00000601981 CNOT7Q9UIV1 285 aaKnown RBP12.24□□□□□ -0.45
UPF1-213ENST00000601981 JAG2Q9Y219 1238 aa12.24□□□□□ -0.45
UPF1-213ENST00000601981 ZBTB12Q9Y330 459 aaPredicted RBP12.24□□□□□ -0.45
UPF1-213ENST00000601981 AK9Q5TCS8 1911 aa12.23□□□□□ -0.45
UPF1-213ENST00000601981 TTC41PQ6P2S7 1318 aa12.23□□□□□ -0.45
UPF1-213ENST00000601981 SALL3Q9BXA9 1300 aa12.23□□□□□ -0.45
UPF1-213ENST00000601981 IGSF3O75054 1194 aa12.23□□□□□ -0.45
UPF1-213ENST00000601981 LDHBP07195 334 aaKnown RBP12.23□□□□□ -0.45
UPF1-213ENST00000601981 EPHX2P34913 555 aa12.23□□□□□ -0.45
UPF1-213ENST00000601981 SLF2Q8IX21 1173 aa12.23□□□□□ -0.45
UPF1-213ENST00000601981 OSBPL3Q9H4L5 887 aa12.23□□□□□ -0.45
UPF1-213ENST00000601981 ADARB2Q9NS39 739 aaKnown RBP12.23□□□□□ -0.45
UPF1-213ENST00000601981 ABCF2Q9UG63 623 aa12.23□□□□□ -0.45
UPF1-213ENST00000601981 MYO5AQ9Y4I1 1855 aaKnown RBP12.23□□□□□ -0.45
UPF1-213ENST00000601981 DOCK2Q92608 1830 aa12.23□□□□□ -0.45
UPF1-213ENST00000601981 COL1A1P02452 1464 aaPredicted RBP12.22□□□□□ -0.45
UPF1-213ENST00000601981 AOX1Q06278 1338 aa12.22□□□□□ -0.45
UPF1-213ENST00000601981 KIF3CO14782 793 aa12.22□□□□□ -0.45
UPF1-213ENST00000601981 MX1P20591 662 aa12.22□□□□□ -0.45
UPF1-213ENST00000601981 MCAMP43121 646 aa12.22□□□□□ -0.45
UPF1-213ENST00000601981 TTF1Q15361 905 aaPredicted RBP12.22□□□□□ -0.45
UPF1-213ENST00000601981 TTC22Q5TAA0 569 aa12.22□□□□□ -0.45
UPF1-213ENST00000601981 USP50Q70EL3 339 aaPredicted RBP12.22□□□□□ -0.45
UPF1-213ENST00000601981 ERICH6Q7L0X2 663 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms