RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 SUCLG2Q96I99 432 aa22.22■■□□□ 1.15
SHKBP1-223ENST00000600552 FZD1Q9UP38 647 aa22.22■■□□□ 1.15
SHKBP1-223ENST00000600552 CLRN2A0PK11 232 aa22.21■■□□□ 1.15
SHKBP1-223ENST00000600552 PUS3Q9BZE2 481 aaKnown RBP22.21■■□□□ 1.15
SHKBP1-223ENST00000600552 PTPN12Q05209 780 aaKnown RBP22.2■■□□□ 1.14
SHKBP1-223ENST00000600552 CFAP100Q494V2 611 aa22.2■■□□□ 1.14
SHKBP1-223ENST00000600552 ARMC9Q7Z3E5 817 aa22.2■■□□□ 1.14
SHKBP1-223ENST00000600552 VEZTQ9HBM0 779 aa22.2■■□□□ 1.14
SHKBP1-223ENST00000600552 ANGEL1Q9UNK9 670 aaKnown RBP22.2■■□□□ 1.14
SHKBP1-223ENST00000600552 IRS2Q9Y4H2 1338 aa22.2■■□□□ 1.14
SHKBP1-223ENST00000600552 NBPF7P0C2Y1 421 aaPredicted RBP22.19■■□□□ 1.14
SHKBP1-223ENST00000600552 IL1R1P14778 569 aa22.19■■□□□ 1.14
SHKBP1-223ENST00000600552 MMP14P50281 582 aa22.19■■□□□ 1.14
SHKBP1-223ENST00000600552 C15orf52Q6ZUT6 534 aaKnown RBP22.19■■□□□ 1.14
SHKBP1-223ENST00000600552 TBC1D8O95759 1140 aa22.18■■□□□ 1.14
SHKBP1-223ENST00000600552 GYG1P46976 350 aa22.18■■□□□ 1.14
SHKBP1-223ENST00000600552 REM2Q8IYK8 340 aaPredicted RBP22.18■■□□□ 1.14
SHKBP1-223ENST00000600552 MRPL50Q8N5N7 158 aaKnown RBP22.18■■□□□ 1.14
SHKBP1-223ENST00000600552 ZBED3Q96IU2 234 aaPredicted RBP22.18■■□□□ 1.14
SHKBP1-223ENST00000600552 DEFB129Q9H1M3 183 aa22.18■■□□□ 1.14
SHKBP1-223ENST00000600552 A0A1B0GUL6 1792 aa22.17■■□□□ 1.14
SHKBP1-223ENST00000600552 MYO1BO43795 1136 aa22.17■■□□□ 1.14
SHKBP1-223ENST00000600552 MLLT1Q03111 559 aaPredicted RBP22.16■■□□□ 1.14
SHKBP1-223ENST00000600552 KAZALD1Q96I82 304 aa22.16■■□□□ 1.14
SHKBP1-223ENST00000600552 PRMT6Q96LA8 375 aaPredicted RBP22.16■■□□□ 1.14
SHKBP1-223ENST00000600552 BICC1Q9H694 974 aaKnown RBP22.16■■□□□ 1.14
SHKBP1-223ENST00000600552 IQSEC3Q9UPP2 1182 aaPredicted RBP22.16■■□□□ 1.14
SHKBP1-223ENST00000600552 HIBADHP31937 336 aaKnown RBP22.15■■□□□ 1.14
SHKBP1-223ENST00000600552 AOX1Q06278 1338 aa22.14■■□□□ 1.14
SHKBP1-223ENST00000600552 ZNF521Q96K83 1311 aa22.14■■□□□ 1.14
SHKBP1-223ENST00000600552 CHAF1AQ13111 956 aaPredicted RBP22.14■■□□□ 1.13
SHKBP1-223ENST00000600552 UBE4AQ14139 1066 aa22.14■■□□□ 1.13
SHKBP1-223ENST00000600552 MFSD14BQ5SR56 506 aa22.14■■□□□ 1.13
SHKBP1-223ENST00000600552 VPS37DQ86XT2 251 aa22.14■■□□□ 1.13
SHKBP1-223ENST00000600552 SLC10A4Q96EP9 437 aa22.14■■□□□ 1.13
SHKBP1-223ENST00000600552 SPDYE2BA6NHP3 402 aa22.13■■□□□ 1.13
SHKBP1-223ENST00000600552 SPDYE6P0CI01 402 aa22.13■■□□□ 1.13
SHKBP1-223ENST00000600552 METTL24Q5JXM2 366 aa22.13■■□□□ 1.13
SHKBP1-223ENST00000600552 SSH1Q8WYL5 1049 aa22.13■■□□□ 1.13
SHKBP1-223ENST00000600552 TTF2Q9UNY4 1162 aaKnown RBP22.13■■□□□ 1.13
SHKBP1-223ENST00000600552 E9PSI1 815 aa22.12■■□□□ 1.13
SHKBP1-223ENST00000600552 FRAT2O75474 233 aaPredicted RBP22.12■■□□□ 1.13
SHKBP1-223ENST00000600552 FKBP1AP62942 108 aaKnown RBP22.12■■□□□ 1.13
SHKBP1-223ENST00000600552 LRRC24Q50LG9 513 aa22.12■■□□□ 1.13
SHKBP1-223ENST00000600552 CTU1Q7Z7A3 348 aaKnown RBP22.12■■□□□ 1.13
SHKBP1-223ENST00000600552 MTMR14Q8NCE2 650 aa22.12■■□□□ 1.13
SHKBP1-223ENST00000600552 KLHDC4Q8TBB5 520 aa22.12■■□□□ 1.13
SHKBP1-223ENST00000600552 FAM84BQ96KN1 310 aaPredicted RBP22.12■■□□□ 1.13
SHKBP1-223ENST00000600552 PPP1R12BO60237 982 aaPredicted RBP22.11■■□□□ 1.13
SHKBP1-223ENST00000600552 SOX10P56693 466 aa22.11■■□□□ 1.13
SHKBP1-223ENST00000600552 SREBF2Q12772 1141 aa22.11■■□□□ 1.13
SHKBP1-223ENST00000600552 NBPF12Q5TAG4 269 aaPredicted RBP22.11■■□□□ 1.13
SHKBP1-223ENST00000600552 ANKRD44Q8N8A2 993 aa22.11■■□□□ 1.13
SHKBP1-223ENST00000600552 TDRD7Q8NHU6 1098 aaKnown RBP22.11■■□□□ 1.13
SHKBP1-223ENST00000600552 RIPOR2Q9Y4F9 1068 aa22.11■■□□□ 1.13
SHKBP1-223ENST00000600552 MROH5Q6ZUA9 1318 aa22.1■■□□□ 1.13
SHKBP1-223ENST00000600552 TM4SF4P48230 202 aa22.1■■□□□ 1.13
SHKBP1-223ENST00000600552 SUPT20HL1Q3ZLR7 823 aa22.1■■□□□ 1.13
SHKBP1-223ENST00000600552 LDLRAD1Q5T700 205 aa22.1■■□□□ 1.13
SHKBP1-223ENST00000600552 SPRYD7Q5W111 196 aa22.1■■□□□ 1.13
SHKBP1-223ENST00000600552 ZNF296Q8WUU4 475 aaPredicted RBP22.1■■□□□ 1.13
SHKBP1-223ENST00000600552 CDCA7LQ96GN5 454 aa22.1■■□□□ 1.13
SHKBP1-223ENST00000600552 CLMNQ96JQ2 1002 aa22.1■■□□□ 1.13
SHKBP1-223ENST00000600552 FAM205AQ6ZU69 1335 aa22.09■■□□□ 1.13
SHKBP1-223ENST00000600552 RASA3Q14644 834 aa22.09■■□□□ 1.13
SHKBP1-223ENST00000600552 TDRD3Q9H7E2 651 aaKnown RBP22.09■■□□□ 1.13
SHKBP1-223ENST00000600552 UTYO14607 1347 aa22.08■■□□□ 1.13
SHKBP1-223ENST00000600552 PTPRCP08575 1304 aa22.08■■□□□ 1.13
SHKBP1-223ENST00000600552 SLFN5Q08AF3 891 aa22.08■■□□□ 1.13
SHKBP1-223ENST00000600552 SMC4Q9NTJ3 1288 aa22.08■■□□□ 1.13
SHKBP1-223ENST00000600552 ZNF70Q9UC06 446 aaPredicted RBP22.08■■□□□ 1.13
SHKBP1-223ENST00000600552 PPP2R3BQ9Y5P8 575 aa22.08■■□□□ 1.13
SHKBP1-223ENST00000600552 ECM29Q5VYK3 1845 aa22.08■■□□□ 1.12
SHKBP1-223ENST00000600552 TCP10L2B9ZVM9 353 aa22.07■■□□□ 1.12
SHKBP1-223ENST00000600552 GPR25O00155 361 aa22.07■■□□□ 1.12
SHKBP1-223ENST00000600552 RGS19P49795 217 aa22.07■■□□□ 1.12
SHKBP1-223ENST00000600552 CAVIN4Q5BKX8 364 aa22.07■■□□□ 1.12
SHKBP1-223ENST00000600552 R3HDMLQ9H3Y0 253 aa22.07■■□□□ 1.12
SHKBP1-223ENST00000600552 COL1A1P02452 1464 aaPredicted RBP22.07■■□□□ 1.12
SHKBP1-223ENST00000600552 CRKP46108 304 aa22.06■■□□□ 1.12
SHKBP1-223ENST00000600552 IREB2P48200 963 aaKnown RBP22.06■■□□□ 1.12
SHKBP1-223ENST00000600552 GRIK5Q16478 980 aa22.06■■□□□ 1.12
SHKBP1-223ENST00000600552 RABL6Q3YEC7 729 aaPredicted RBP22.06■■□□□ 1.12
SHKBP1-223ENST00000600552 WNK4Q96J92 1243 aa22.06■■□□□ 1.12
SHKBP1-223ENST00000600552 USP44Q9H0E7 712 aa22.06■■□□□ 1.12
SHKBP1-223ENST00000600552 BCAMP50895 628 aa22.05■■□□□ 1.12
SHKBP1-223ENST00000600552 FBXO33Q7Z6M2 555 aa22.05■■□□□ 1.12
SHKBP1-223ENST00000600552 DZIP1LQ8IYY4 767 aaKnown RBP22.05■■□□□ 1.12
SHKBP1-223ENST00000600552 SERPINA10Q9UK55 444 aa22.05■■□□□ 1.12
SHKBP1-223ENST00000600552 SSC5DA1L4H1 1573 aa22.04■■□□□ 1.12
SHKBP1-223ENST00000600552 MANSC4A6NHS7 340 aaPredicted RBP22.04■■□□□ 1.12
SHKBP1-223ENST00000600552 USP2O75604 605 aaPredicted RBP22.04■■□□□ 1.12
SHKBP1-223ENST00000600552 PDE8BO95263 885 aa22.04■■□□□ 1.12
SHKBP1-223ENST00000600552 SPDYE2Q495Y8 402 aa22.04■■□□□ 1.12
SHKBP1-223ENST00000600552 FKTNO75072 461 aa22.03■■□□□ 1.12
SHKBP1-223ENST00000600552 TNFAIP1Q13829 316 aa22.03■■□□□ 1.12
SHKBP1-223ENST00000600552 CDAN1Q8IWY9 1227 aa22.03■■□□□ 1.12
SHKBP1-223ENST00000600552 ELP3Q9H9T3 547 aa22.03■■□□□ 1.12
SHKBP1-223ENST00000600552 HPS5Q9UPZ3 1129 aa22.03■■□□□ 1.12
SHKBP1-223ENST00000600552 CACNB3P54284 484 aa22.02■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms