RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 AKAP11Q9UKA4 1901 aa20.17■□□□□ 0.82
LSM4-206ENST00000600289 H7C1D1 291 aa20.16■□□□□ 0.82
LSM4-206ENST00000600289 METTL24Q5JXM2 366 aa20.16■□□□□ 0.82
LSM4-206ENST00000600289 DACT2Q5SW24 774 aa20.16■□□□□ 0.82
LSM4-206ENST00000600289 ATG9AQ7Z3C6 839 aa20.16■□□□□ 0.82
LSM4-206ENST00000600289 MICALL2Q8IY33 904 aa20.16■□□□□ 0.82
LSM4-206ENST00000600289 PGAP2Q9UHJ9 254 aa20.16■□□□□ 0.82
LSM4-206ENST00000600289 ZBTB7BO15156 539 aaPredicted RBP20.15■□□□□ 0.82
LSM4-206ENST00000600289 PLIN1O60240 522 aa20.15■□□□□ 0.82
LSM4-206ENST00000600289 MMP14P50281 582 aa20.15■□□□□ 0.82
LSM4-206ENST00000600289 ITPRIPQ8IWB1 547 aa20.15■□□□□ 0.82
LSM4-206ENST00000600289 HHIPL1Q96JK4 782 aa20.15■□□□□ 0.82
LSM4-206ENST00000600289 SRGAP3O43295 1099 aa20.14■□□□□ 0.81
LSM4-206ENST00000600289 FGFR2P21802 821 aa20.14■□□□□ 0.81
LSM4-206ENST00000600289 ZNF280AP59817 542 aaPredicted RBP20.14■□□□□ 0.81
LSM4-206ENST00000600289 ZC3H15Q8WU90 426 aaKnown RBP20.14■□□□□ 0.81
LSM4-206ENST00000600289 ZIC5Q96T25 663 aa20.14■□□□□ 0.81
LSM4-206ENST00000600289 IL15P40933 162 aaPredicted RBP20.13■□□□□ 0.81
LSM4-206ENST00000600289 PUM3Q15397 648 aaKnown RBP20.13■□□□□ 0.81
LSM4-206ENST00000600289 POLR2AP24928 1970 aaKnown RBP20.13■□□□□ 0.81
LSM4-206ENST00000600289 SHTN1A0MZ66 631 aa20.12■□□□□ 0.81
LSM4-206ENST00000600289 HIRAP54198 1017 aaPredicted RBP20.12■□□□□ 0.81
LSM4-206ENST00000600289 FKBP1AP62942 108 aaKnown RBP20.12■□□□□ 0.81
LSM4-206ENST00000600289 TTLL5Q6EMB2 1281 aa20.12■□□□□ 0.81
LSM4-206ENST00000600289 TRPM4Q8TD43 1214 aa20.12■□□□□ 0.81
LSM4-206ENST00000600289 PANK1Q8TE04 598 aa20.12■□□□□ 0.81
LSM4-206ENST00000600289 FAM84BQ96KN1 310 aaPredicted RBP20.12■□□□□ 0.81
LSM4-206ENST00000600289 FAM205AQ6ZU69 1335 aa20.11■□□□□ 0.81
LSM4-206ENST00000600289 CELF2O95319 508 aaKnown RBP20.11■□□□□ 0.81
LSM4-206ENST00000600289 FBXO33Q7Z6M2 555 aa20.11■□□□□ 0.81
LSM4-206ENST00000600289 TDRD7Q8NHU6 1098 aaKnown RBP20.11■□□□□ 0.81
LSM4-206ENST00000600289 USP17L8P0C7I0 530 aa20.1■□□□□ 0.81
LSM4-206ENST00000600289 HIBADHP31937 336 aaKnown RBP20.1■□□□□ 0.81
LSM4-206ENST00000600289 POLA2Q14181 598 aa20.1■□□□□ 0.81
LSM4-206ENST00000600289 MVPQ14764 893 aaKnown RBP20.1■□□□□ 0.81
LSM4-206ENST00000600289 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.1■□□□□ 0.81
LSM4-206ENST00000600289 LPIN2Q92539 896 aa20.1■□□□□ 0.81
LSM4-206ENST00000600289 SIL1Q9H173 461 aa20.1■□□□□ 0.81
LSM4-206ENST00000600289 PA2G4Q9UQ80 394 aaKnown RBP20.1■□□□□ 0.81
LSM4-206ENST00000600289 PNMA6EA0A0J9YXQ4 647 aa20.09■□□□□ 0.81
LSM4-206ENST00000600289 ZBTB22O15209 634 aa20.09■□□□□ 0.81
LSM4-206ENST00000600289 SASH1O94885 1247 aa20.09■□□□□ 0.81
LSM4-206ENST00000600289 IFIT1P09914 478 aaKnown RBP20.09■□□□□ 0.81
LSM4-206ENST00000600289 GYG1P46976 350 aa20.09■□□□□ 0.81
LSM4-206ENST00000600289 GTF2IP78347 998 aa20.09■□□□□ 0.81
LSM4-206ENST00000600289 PDE3AQ14432 1141 aa20.09■□□□□ 0.81
LSM4-206ENST00000600289 SAMD7Q7Z3H4 446 aa20.09■□□□□ 0.81
LSM4-206ENST00000600289 SSH3Q8TE77 659 aa20.09■□□□□ 0.81
LSM4-206ENST00000600289 CEP126Q9P2H0 1117 aa20.09■□□□□ 0.81
LSM4-206ENST00000600289 MKI67P46013 3256 aaKnown RBP20.09■□□□□ 0.81
LSM4-206ENST00000600289 EGFRP00533 1210 aa20.08■□□□□ 0.81
LSM4-206ENST00000600289 SLC5A1P13866 664 aa20.08■□□□□ 0.81
LSM4-206ENST00000600289 ATP8B2P98198 1209 aa20.08■□□□□ 0.81
LSM4-206ENST00000600289 KIF4BQ2VIQ3 1234 aa20.08■□□□□ 0.81
LSM4-206ENST00000600289 CAVIN4Q5BKX8 364 aa20.08■□□□□ 0.81
LSM4-206ENST00000600289 DDX19BQ9UMR2 479 aa20.08■□□□□ 0.81
LSM4-206ENST00000600289 TBC1D10BQ4KMP7 808 aaPredicted RBP20.07■□□□□ 0.8
LSM4-206ENST00000600289 FBXW7Q969H0 707 aa20.07■□□□□ 0.8
LSM4-206ENST00000600289 MYOZ2Q9NPC6 264 aa20.07■□□□□ 0.8
LSM4-206ENST00000600289 NOGQ13253 232 aa20.06■□□□□ 0.8
LSM4-206ENST00000600289 ATP2B3Q16720 1220 aa20.06■□□□□ 0.8
LSM4-206ENST00000600289 OGFOD1Q8N543 542 aa20.06■□□□□ 0.8
LSM4-206ENST00000600289 CERS5Q8N5B7 392 aa20.06■□□□□ 0.8
LSM4-206ENST00000600289 MXD3Q9BW11 206 aa20.06■□□□□ 0.8
LSM4-206ENST00000600289 GLIS2Q9BZE0 524 aaPredicted RBP20.06■□□□□ 0.8
LSM4-206ENST00000600289 CHMP4BQ9H444 224 aaKnown RBP20.06■□□□□ 0.8
LSM4-206ENST00000600289 VPS37DQ86XT2 251 aa20.05■□□□□ 0.8
LSM4-206ENST00000600289 YTHDC1Q96MU7 727 aaKnown RBP20.05■□□□□ 0.8
LSM4-206ENST00000600289 C1orf115Q9H7X2 142 aa20.05■□□□□ 0.8
LSM4-206ENST00000600289 PITPNM2Q9BZ72 1349 aa20.04■□□□□ 0.8
LSM4-206ENST00000600289 CEP85Q6P2H3 762 aa20.04■□□□□ 0.8
LSM4-206ENST00000600289 CDC37L1Q7L3B6 337 aa20.04■□□□□ 0.8
LSM4-206ENST00000600289 GCC1Q96CN9 775 aa20.04■□□□□ 0.8
LSM4-206ENST00000600289 ZBTB40Q9NUA8 1239 aa20.04■□□□□ 0.8
LSM4-206ENST00000600289 SAGE1Q9NXZ1 904 aa20.04■□□□□ 0.8
LSM4-206ENST00000600289 HDAC9Q9UKV0 1011 aa20.04■□□□□ 0.8
LSM4-206ENST00000600289 COG6Q9Y2V7 657 aa20.04■□□□□ 0.8
LSM4-206ENST00000600289 HABP4Q5JVS0 413 aaKnown RBP20.03■□□□□ 0.8
LSM4-206ENST00000600289 MTMR14Q8NCE2 650 aa20.03■□□□□ 0.8
LSM4-206ENST00000600289 TBC1D22AQ8WUA7 517 aa20.03■□□□□ 0.8
LSM4-206ENST00000600289 ZBED3Q96IU2 234 aaPredicted RBP20.03■□□□□ 0.8
LSM4-206ENST00000600289 AKAP2Q9Y2D5 859 aa20.03■□□□□ 0.8
LSM4-206ENST00000600289 NOP58Q9Y2X3 529 aaKnown RBP20.03■□□□□ 0.8
LSM4-206ENST00000600289 BCAMP50895 628 aa20.02■□□□□ 0.8
LSM4-206ENST00000600289 G3BP1Q13283 466 aaKnown RBP eCLIP20.02■□□□□ 0.8
LSM4-206ENST00000600289 RBM26Q5T8P6 1007 aaKnown RBP20.02■□□□□ 0.8
LSM4-206ENST00000600289 KIAA0825Q8IV33 1275 aa20.02■□□□□ 0.8
LSM4-206ENST00000600289 COL1A1P02452 1464 aaPredicted RBP20.02■□□□□ 0.8
LSM4-206ENST00000600289 FAM155AB1AL88 458 aaPredicted RBP20.01■□□□□ 0.79
LSM4-206ENST00000600289 TFCP2Q12800 502 aa20.01■□□□□ 0.79
LSM4-206ENST00000600289 SCARF1Q14162 830 aa20.01■□□□□ 0.79
LSM4-206ENST00000600289 MFSD14BQ5SR56 506 aa20.01■□□□□ 0.79
LSM4-206ENST00000600289 DCPSQ96C86 337 aaKnown RBP20.01■□□□□ 0.79
LSM4-206ENST00000600289 ZNF408Q9H9D4 720 aa20.01■□□□□ 0.79
LSM4-206ENST00000600289 GPR108Q9NPR9 543 aa20.01■□□□□ 0.79
LSM4-206ENST00000600289 GGA3Q9NZ52 723 aa20.01■□□□□ 0.79
LSM4-206ENST00000600289 A0A1B0GUL7 405 aa20■□□□□ 0.79
LSM4-206ENST00000600289 WNT10BO00744 389 aa20■□□□□ 0.79
LSM4-206ENST00000600289 SEMA3EO15041 775 aa20■□□□□ 0.79
LSM4-206ENST00000600289 C20orf194Q5TEA3 1177 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms