RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 PSMD1Q99460 953 aa18.39■□□□□ 0.53
TRIM28-209ENST00000597423 HELLSQ9NRZ9 838 aa18.39■□□□□ 0.53
TRIM28-209ENST00000597423 EPB41L2O43491 1005 aaKnown RBP18.38■□□□□ 0.53
TRIM28-209ENST00000597423 IDH1O75874 414 aaKnown RBP18.38■□□□□ 0.53
TRIM28-209ENST00000597423 OLFM4Q6UX06 510 aa18.38■□□□□ 0.53
TRIM28-209ENST00000597423 ANTXR1Q9H6X2 564 aa18.38■□□□□ 0.53
TRIM28-209ENST00000597423 IQSEC3Q9UPP2 1182 aaPredicted RBP18.38■□□□□ 0.53
TRIM28-209ENST00000597423 RAD50Q92878 1312 aa18.38■□□□□ 0.53
TRIM28-209ENST00000597423 CHAF1AQ13111 956 aaPredicted RBP18.37■□□□□ 0.53
TRIM28-209ENST00000597423 MCMDC2Q4G0Z9 681 aa18.37■□□□□ 0.53
TRIM28-209ENST00000597423 SLC9C2Q5TAH2 1124 aa18.37■□□□□ 0.53
TRIM28-209ENST00000597423 PI16Q6UXB8 463 aa18.37■□□□□ 0.53
TRIM28-209ENST00000597423 PODNQ7Z5L7 613 aa18.37■□□□□ 0.53
TRIM28-209ENST00000597423 TBC1D22AQ8WUA7 517 aa18.37■□□□□ 0.53
TRIM28-209ENST00000597423 COL11A2P13942 1736 aaPredicted RBP18.37■□□□□ 0.53
TRIM28-209ENST00000597423 SGSM2O43147 1006 aa18.36■□□□□ 0.53
TRIM28-209ENST00000597423 SEC24BO95487 1268 aa18.36■□□□□ 0.53
TRIM28-209ENST00000597423 NMIQ13287 307 aaPredicted RBP18.36■□□□□ 0.53
TRIM28-209ENST00000597423 UBE3CQ15386 1083 aa18.36■□□□□ 0.53
TRIM28-209ENST00000597423 ERICH6Q7L0X2 663 aa18.36■□□□□ 0.53
TRIM28-209ENST00000597423 ARAP2Q8WZ64 1704 aa18.36■□□□□ 0.53
TRIM28-209ENST00000597423 GPR101Q96P66 508 aaPredicted RBP18.36■□□□□ 0.53
TRIM28-209ENST00000597423 PIH1D3Q9NQM4 214 aaKnown RBP18.36■□□□□ 0.53
TRIM28-209ENST00000597423 TSHZ2Q9NRE2 1034 aa18.36■□□□□ 0.53
TRIM28-209ENST00000597423 ABCF2Q9UG63 623 aa18.36■□□□□ 0.53
TRIM28-209ENST00000597423 KIF13BQ9NQT8 1826 aa18.35■□□□□ 0.53
TRIM28-209ENST00000597423 SALL1Q9NSC2 1324 aa18.35■□□□□ 0.53
TRIM28-209ENST00000597423 MCCP23508 829 aa18.35■□□□□ 0.53
TRIM28-209ENST00000597423 RAI14Q9P0K7 980 aa18.35■□□□□ 0.53
TRIM28-209ENST00000597423 BCS1LQ9Y276 419 aa18.35■□□□□ 0.53
TRIM28-209ENST00000597423 SOCS7O14512 581 aa18.34■□□□□ 0.53
TRIM28-209ENST00000597423 KIAA2012Q0VF49 1180 aa18.34■□□□□ 0.53
TRIM28-209ENST00000597423 ZMYM1Q5SVZ6 1142 aa18.34■□□□□ 0.53
TRIM28-209ENST00000597423 SLC51AQ86UW1 340 aa18.34■□□□□ 0.53
TRIM28-209ENST00000597423 APPBP2Q92624 585 aa18.34■□□□□ 0.53
TRIM28-209ENST00000597423 C22orf23Q9BZE7 217 aa18.34■□□□□ 0.53
TRIM28-209ENST00000597423 ANO2Q9NQ90 1003 aa18.34■□□□□ 0.53
TRIM28-209ENST00000597423 LRRC37AA6NMS7 1700 aa18.34■□□□□ 0.53
TRIM28-209ENST00000597423 SLX4Q8IY92 1834 aa18.33■□□□□ 0.53
TRIM28-209ENST00000597423 FAM205AQ6ZU69 1335 aa18.33■□□□□ 0.53
TRIM28-209ENST00000597423 PPIP5K2O43314 1243 aa18.33■□□□□ 0.52
TRIM28-209ENST00000597423 ADD2P35612 726 aa18.33■□□□□ 0.52
TRIM28-209ENST00000597423 GSTO1P78417 241 aa18.33■□□□□ 0.52
TRIM28-209ENST00000597423 DOK7Q18PE1 504 aa18.33■□□□□ 0.52
TRIM28-209ENST00000597423 FAM227BQ96M60 508 aa18.33■□□□□ 0.52
TRIM28-209ENST00000597423 SUGT1Q9Y2Z0 365 aa18.33■□□□□ 0.52
TRIM28-209ENST00000597423 LDHBP07195 334 aaKnown RBP18.32■□□□□ 0.52
TRIM28-209ENST00000597423 PDE6AP16499 860 aa18.32■□□□□ 0.52
TRIM28-209ENST00000597423 SLF2Q8IX21 1173 aa18.32■□□□□ 0.52
TRIM28-209ENST00000597423 MAGEB6Q8N7X4 407 aa18.32■□□□□ 0.52
TRIM28-209ENST00000597423 USP26Q9BXU7 913 aa18.32■□□□□ 0.52
TRIM28-209ENST00000597423 FHDC1Q9C0D6 1143 aaPredicted RBP18.32■□□□□ 0.52
TRIM28-209ENST00000597423 LDHCP07864 332 aa18.31■□□□□ 0.52
TRIM28-209ENST00000597423 TTLL5Q6EMB2 1281 aa18.31■□□□□ 0.52
TRIM28-209ENST00000597423 NAA16Q6N069 864 aaPredicted RBP18.31■□□□□ 0.52
TRIM28-209ENST00000597423 LARGE2Q8N3Y3 721 aa18.31■□□□□ 0.52
TRIM28-209ENST00000597423 TAOK3Q9H2K8 898 aa18.31■□□□□ 0.52
TRIM28-209ENST00000597423 A0A1B0GUL6 1792 aa18.31■□□□□ 0.52
TRIM28-209ENST00000597423 DLEC1Q9Y238 1755 aa18.3■□□□□ 0.52
TRIM28-209ENST00000597423 ZNF532Q9HCE3 1301 aa18.3■□□□□ 0.52
TRIM28-209ENST00000597423 A0A0D9SFI3 127 aa18.3■□□□□ 0.52
TRIM28-209ENST00000597423 CYP7A1P22680 504 aa18.3■□□□□ 0.52
TRIM28-209ENST00000597423 GTF2IP78347 998 aa18.3■□□□□ 0.52
TRIM28-209ENST00000597423 AOC3Q16853 763 aa18.3■□□□□ 0.52
TRIM28-209ENST00000597423 DZIP1Q86YF9 867 aaKnown RBP18.3■□□□□ 0.52
TRIM28-209ENST00000597423 NLGN2Q8NFZ4 835 aa18.3■□□□□ 0.52
TRIM28-209ENST00000597423 CCDC171Q6TFL3 1326 aa18.29■□□□□ 0.52
TRIM28-209ENST00000597423 ECE2O60344 883 aa18.29■□□□□ 0.52
TRIM28-209ENST00000597423 FKBP1AP62942 108 aaKnown RBP18.29■□□□□ 0.52
TRIM28-209ENST00000597423 MFSD14BQ5SR56 506 aa18.29■□□□□ 0.52
TRIM28-209ENST00000597423 STRIP1Q5VSL9 837 aa18.29■□□□□ 0.52
TRIM28-209ENST00000597423 FBXW7Q969H0 707 aa18.29■□□□□ 0.52
TRIM28-209ENST00000597423 TBC1D32Q96NH3 1257 aa18.29■□□□□ 0.52
TRIM28-209ENST00000597423 SYT17Q9BSW7 474 aa18.29■□□□□ 0.52
TRIM28-209ENST00000597423 WWC3Q9ULE0 1092 aa18.29■□□□□ 0.52
TRIM28-209ENST00000597423 RBM19Q9Y4C8 960 aaKnown RBP18.29■□□□□ 0.52
TRIM28-209ENST00000597423 USP17L3A6NCW0 530 aa18.28■□□□□ 0.52
TRIM28-209ENST00000597423 USP17L4A6NCW7 530 aa18.28■□□□□ 0.52
TRIM28-209ENST00000597423 IARSP41252 1262 aaKnown RBP18.28■□□□□ 0.52
TRIM28-209ENST00000597423 RBM25P49756 843 aaKnown RBP18.28■□□□□ 0.52
TRIM28-209ENST00000597423 USP17L1Q7RTZ2 530 aa18.28■□□□□ 0.52
TRIM28-209ENST00000597423 CERS3Q8IU89 383 aa18.28■□□□□ 0.52
TRIM28-209ENST00000597423 NIM1KQ8IY84 436 aa18.28■□□□□ 0.52
TRIM28-209ENST00000597423 JDP2Q8WYK2 163 aa18.28■□□□□ 0.52
TRIM28-209ENST00000597423 OSBP2Q969R2 916 aa18.28■□□□□ 0.52
TRIM28-209ENST00000597423 AIDAQ96BJ3 306 aa18.28■□□□□ 0.52
TRIM28-209ENST00000597423 NOL10Q9BSC4 688 aaKnown RBP18.28■□□□□ 0.52
TRIM28-209ENST00000597423 DBNDD1Q9H9R9 158 aa18.28■□□□□ 0.52
TRIM28-209ENST00000597423 ZNF277Q9NRM2 450 aaPredicted RBP18.28■□□□□ 0.52
TRIM28-209ENST00000597423 LTBP3Q9NS15 1303 aa18.27■□□□□ 0.52
TRIM28-209ENST00000597423 LTBP1Q14766 1721 aa18.27■□□□□ 0.52
TRIM28-209ENST00000597423 SNED1Q8TER0 1413 aa18.27■□□□□ 0.52
TRIM28-209ENST00000597423 TCRBV5S4A2TA0A5A2 114 aa18.27■□□□□ 0.52
TRIM28-209ENST00000597423 GNAT2P19087 354 aa18.27■□□□□ 0.52
TRIM28-209ENST00000597423 MECOMQ03112 1051 aa18.27■□□□□ 0.52
TRIM28-209ENST00000597423 RNF20Q5VTR2 975 aa18.27■□□□□ 0.52
TRIM28-209ENST00000597423 NSUN4Q96CB9 384 aaKnown RBP18.27■□□□□ 0.52
TRIM28-209ENST00000597423 LSG1Q9H089 658 aaKnown RBP18.27■□□□□ 0.52
TRIM28-209ENST00000597423 CTNNA3Q9UI47 895 aa18.27■□□□□ 0.52
TRIM28-209ENST00000597423 JAG2Q9Y219 1238 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms