RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 AIDAQ96BJ3 306 aa16.4■□□□□ 0.22
LIG1-212ENST00000596549 PCDHAC2Q9Y5I4 1007 aa16.4■□□□□ 0.22
LIG1-212ENST00000596549 COL1A1P02452 1464 aaPredicted RBP16.4■□□□□ 0.22
LIG1-212ENST00000596549 FAM155AB1AL88 458 aaPredicted RBP16.39■□□□□ 0.21
LIG1-212ENST00000596549 MAP2K1Q02750 393 aaPredicted RBP16.39■□□□□ 0.21
LIG1-212ENST00000596549 ZIC5Q96T25 663 aa16.39■□□□□ 0.21
LIG1-212ENST00000596549 API5Q9BZZ5 524 aaKnown RBP16.39■□□□□ 0.21
LIG1-212ENST00000596549 TNNQ9UQP3 1299 aa16.39■□□□□ 0.21
LIG1-212ENST00000596549 AOX1Q06278 1338 aa16.39■□□□□ 0.21
LIG1-212ENST00000596549 FAM205AQ6ZU69 1335 aa16.39■□□□□ 0.21
LIG1-212ENST00000596549 CTCFP49711 727 aaPredicted RBP16.38■□□□□ 0.21
LIG1-212ENST00000596549 FKBP1AP62942 108 aaKnown RBP16.38■□□□□ 0.21
LIG1-212ENST00000596549 METTL24Q5JXM2 366 aa16.38■□□□□ 0.21
LIG1-212ENST00000596549 TDRD7Q8NHU6 1098 aaKnown RBP16.38■□□□□ 0.21
LIG1-212ENST00000596549 FAM84BQ96KN1 310 aaPredicted RBP16.38■□□□□ 0.21
LIG1-212ENST00000596549 MEIS3Q99687 375 aa16.38■□□□□ 0.21
LIG1-212ENST00000596549 HDAC9Q9UKV0 1011 aa16.38■□□□□ 0.21
LIG1-212ENST00000596549 F8W031 263 aaPredicted RBP16.37■□□□□ 0.21
LIG1-212ENST00000596549 PDE8BO95263 885 aa16.37■□□□□ 0.21
LIG1-212ENST00000596549 UBTFL1P0CB47 393 aaPredicted RBP16.37■□□□□ 0.21
LIG1-212ENST00000596549 MAP2K2P36507 400 aa16.37■□□□□ 0.21
LIG1-212ENST00000596549 LBX1P52954 281 aa16.37■□□□□ 0.21
LIG1-212ENST00000596549 HNRNPUQ00839 825 aaKnown RBP eCLIP16.37■□□□□ 0.21
LIG1-212ENST00000596549 PTPN12Q05209 780 aaKnown RBP16.37■□□□□ 0.21
LIG1-212ENST00000596549 PRAMEF18Q5VWM3 479 aa16.37■□□□□ 0.21
LIG1-212ENST00000596549 RGMBQ6NW40 437 aa16.37■□□□□ 0.21
LIG1-212ENST00000596549 TNS4Q8IZW8 715 aa16.37■□□□□ 0.21
LIG1-212ENST00000596549 C2orf69Q8N8R5 385 aa16.37■□□□□ 0.21
LIG1-212ENST00000596549 PRDM10Q9NQV6 1147 aa16.37■□□□□ 0.21
LIG1-212ENST00000596549 FGFR2P21802 821 aa16.36■□□□□ 0.21
LIG1-212ENST00000596549 HIBADHP31937 336 aaKnown RBP16.36■□□□□ 0.21
LIG1-212ENST00000596549 MMP14P50281 582 aa16.36■□□□□ 0.21
LIG1-212ENST00000596549 MOB2Q70IA6 237 aa16.36■□□□□ 0.21
LIG1-212ENST00000596549 LRRFIP2Q9Y608 721 aaKnown RBP16.36■□□□□ 0.21
LIG1-212ENST00000596549 EYA2O00167 538 aa16.35■□□□□ 0.21
LIG1-212ENST00000596549 BCAR3O75815 825 aa16.35■□□□□ 0.21
LIG1-212ENST00000596549 SLC10A3P09131 477 aa16.35■□□□□ 0.21
LIG1-212ENST00000596549 TRIM27P14373 513 aa16.35■□□□□ 0.21
LIG1-212ENST00000596549 INTS3Q68E01 1043 aaKnown RBP16.35■□□□□ 0.21
LIG1-212ENST00000596549 ATG9AQ7Z3C6 839 aa16.35■□□□□ 0.21
LIG1-212ENST00000596549 MTMR14Q8NCE2 650 aa16.35■□□□□ 0.21
LIG1-212ENST00000596549 ARHGAP45Q92619 1136 aa16.35■□□□□ 0.21
LIG1-212ENST00000596549 TSKSQ9UJT2 592 aa16.35■□□□□ 0.21
LIG1-212ENST00000596549 NOGQ13253 232 aa16.34■□□□□ 0.21
LIG1-212ENST00000596549 GRIK5Q16478 980 aa16.34■□□□□ 0.21
LIG1-212ENST00000596549 CFAP100Q494V2 611 aa16.34■□□□□ 0.21
LIG1-212ENST00000596549 MFSD14BQ5SR56 506 aa16.34■□□□□ 0.21
LIG1-212ENST00000596549 FBXO33Q7Z6M2 555 aa16.34■□□□□ 0.21
LIG1-212ENST00000596549 RASAL3Q86YV0 1011 aa16.34■□□□□ 0.21
LIG1-212ENST00000596549 APOBEC3FQ8IUX4 373 aaKnown RBP16.34■□□□□ 0.21
LIG1-212ENST00000596549 IQSEC3Q9UPP2 1182 aaPredicted RBP16.34■□□□□ 0.21
LIG1-212ENST00000596549 CASP8AP2Q9UKL3 1982 aa16.34■□□□□ 0.21
LIG1-212ENST00000596549 SPDYE2BA6NHP3 402 aa16.33■□□□□ 0.2
LIG1-212ENST00000596549 SPDYE6P0CI01 402 aa16.33■□□□□ 0.2
LIG1-212ENST00000596549 FKBP1BP68106 108 aa16.33■□□□□ 0.2
LIG1-212ENST00000596549 PUM3Q15397 648 aaKnown RBP16.33■□□□□ 0.2
LIG1-212ENST00000596549 DLGAP5Q15398 846 aa16.33■□□□□ 0.2
LIG1-212ENST00000596549 SIL1Q9H173 461 aa16.33■□□□□ 0.2
LIG1-212ENST00000596549 CLRN2A0PK11 232 aa16.32■□□□□ 0.2
LIG1-212ENST00000596549 ZNF157P51786 506 aaPredicted RBP16.32■□□□□ 0.2
LIG1-212ENST00000596549 ATF7IPQ6VMQ6 1270 aa16.32■□□□□ 0.2
LIG1-212ENST00000596549 PRMT6Q96LA8 375 aaPredicted RBP16.32■□□□□ 0.2
LIG1-212ENST00000596549 PA2G4Q9UQ80 394 aaKnown RBP16.32■□□□□ 0.2
LIG1-212ENST00000596549 ZBED9Q6R2W3 1325 aa16.31■□□□□ 0.2
LIG1-212ENST00000596549 CIAO1O76071 339 aa16.31■□□□□ 0.2
LIG1-212ENST00000596549 BCAMP50895 628 aa16.31■□□□□ 0.2
LIG1-212ENST00000596549 TTF2Q9UNY4 1162 aaKnown RBP16.31■□□□□ 0.2
LIG1-212ENST00000596549 FZD1Q9UP38 647 aa16.31■□□□□ 0.2
LIG1-212ENST00000596549 KIF23Q02241 960 aaPredicted RBP16.3■□□□□ 0.2
LIG1-212ENST00000596549 CHAF1AQ13111 956 aaPredicted RBP16.3■□□□□ 0.2
LIG1-212ENST00000596549 CAVIN4Q5BKX8 364 aa16.3■□□□□ 0.2
LIG1-212ENST00000596549 FRAT1Q92837 279 aaPredicted RBP16.3■□□□□ 0.2
LIG1-212ENST00000596549 CCDC102AQ96A19 550 aa16.3■□□□□ 0.2
LIG1-212ENST00000596549 BEGAINQ9BUH8 593 aa16.3■□□□□ 0.2
LIG1-212ENST00000596549 FBXO3Q9UK99 471 aa16.3■□□□□ 0.2
LIG1-212ENST00000596549 MYH2Q9UKX2 1941 aa16.29■□□□□ 0.2
LIG1-212ENST00000596549 DOCK2Q92608 1830 aa16.29■□□□□ 0.2
LIG1-212ENST00000596549 UBE2Q2LH0YL09 131 aa16.29■□□□□ 0.2
LIG1-212ENST00000596549 IFIT1P09914 478 aaKnown RBP16.29■□□□□ 0.2
LIG1-212ENST00000596549 MTX1Q13505 466 aa16.29■□□□□ 0.2
LIG1-212ENST00000596549 VPS37DQ86XT2 251 aa16.29■□□□□ 0.2
LIG1-212ENST00000596549 LPIN2Q92539 896 aa16.29■□□□□ 0.2
LIG1-212ENST00000596549 CLUAP1Q96AJ1 413 aa16.29■□□□□ 0.2
LIG1-212ENST00000596549 DEFB129Q9H1M3 183 aa16.29■□□□□ 0.2
LIG1-212ENST00000596549 COPRSQ9NQ92 184 aa16.29■□□□□ 0.2
LIG1-212ENST00000596549 SERPINA10Q9UK55 444 aa16.29■□□□□ 0.2
LIG1-212ENST00000596549 MAST2Q6P0Q8 1798 aa16.28■□□□□ 0.2
LIG1-212ENST00000596549 SLC5A1P13866 664 aa16.28■□□□□ 0.2
LIG1-212ENST00000596549 CRKP46108 304 aa16.28■□□□□ 0.2
LIG1-212ENST00000596549 PRKG1Q13976 671 aa16.28■□□□□ 0.2
LIG1-212ENST00000596549 SPDYE2Q495Y8 402 aa16.28■□□□□ 0.2
LIG1-212ENST00000596549 VEZTQ9HBM0 779 aa16.28■□□□□ 0.2
LIG1-212ENST00000596549 PPP2R3BQ9Y5P8 575 aa16.28■□□□□ 0.2
LIG1-212ENST00000596549 IPO8O15397 1037 aaKnown RBP16.27■□□□□ 0.2
LIG1-212ENST00000596549 CA12O43570 354 aa16.27■□□□□ 0.2
LIG1-212ENST00000596549 MYO1BO43795 1136 aa16.27■□□□□ 0.2
LIG1-212ENST00000596549 CAPN15O75808 1086 aa16.27■□□□□ 0.2
LIG1-212ENST00000596549 GNAI3P08754 354 aa16.27■□□□□ 0.2
LIG1-212ENST00000596549 NF2P35240 595 aa16.27■□□□□ 0.2
LIG1-212ENST00000596549 RBM5P52756 815 aaKnown RBP eCLIP16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms