RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 F8W031 263 aaPredicted RBP13.71□□□□□ -0.21
LIG1-211ENST00000596457 FOXN1O15353 648 aa13.71□□□□□ -0.21
LIG1-211ENST00000596457 IL1R1P14778 569 aa13.71□□□□□ -0.21
LIG1-211ENST00000596457 TBC1D10BQ4KMP7 808 aaPredicted RBP13.71□□□□□ -0.21
LIG1-211ENST00000596457 DACT2Q5SW24 774 aa13.71□□□□□ -0.21
LIG1-211ENST00000596457 STRIP1Q5VSL9 837 aa13.71□□□□□ -0.21
LIG1-211ENST00000596457 USP50Q70EL3 339 aaPredicted RBP13.71□□□□□ -0.21
LIG1-211ENST00000596457 FBXO33Q7Z6M2 555 aa13.71□□□□□ -0.21
LIG1-211ENST00000596457 AGBL3Q8NEM8 1001 aa13.71□□□□□ -0.21
LIG1-211ENST00000596457 DPF2Q92785 391 aa13.71□□□□□ -0.21
LIG1-211ENST00000596457 ABHD8Q96I13 439 aa13.71□□□□□ -0.21
LIG1-211ENST00000596457 CRBNQ96SW2 442 aa13.71□□□□□ -0.21
LIG1-211ENST00000596457 SUPT16HQ9Y5B9 1047 aaKnown RBP13.71□□□□□ -0.21
LIG1-211ENST00000596457 ZNF646O15015 1829 aaPredicted RBP13.71□□□□□ -0.22
LIG1-211ENST00000596457 APBB1O00213 710 aa13.7□□□□□ -0.22
LIG1-211ENST00000596457 ADORA1P30542 326 aa13.7□□□□□ -0.22
LIG1-211ENST00000596457 MAP1SQ66K74 1059 aaPredicted RBP13.7□□□□□ -0.22
LIG1-211ENST00000596457 RPAP2Q8IXW5 612 aaPredicted RBP13.7□□□□□ -0.22
LIG1-211ENST00000596457 TDRD7Q8NHU6 1098 aaKnown RBP13.7□□□□□ -0.22
LIG1-211ENST00000596457 TRPM4Q8TD43 1214 aa13.7□□□□□ -0.22
LIG1-211ENST00000596457 PRDM10Q9NQV6 1147 aa13.7□□□□□ -0.22
LIG1-211ENST00000596457 EXOC6BQ9Y2D4 811 aa13.7□□□□□ -0.22
LIG1-211ENST00000596457 AKAP2Q9Y2D5 859 aa13.7□□□□□ -0.22
LIG1-211ENST00000596457 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.7□□□□□ -0.22
LIG1-211ENST00000596457 PASKQ96RG2 1323 aa13.69□□□□□ -0.22
LIG1-211ENST00000596457 ADAMTSL1Q8N6G6 1762 aa13.69□□□□□ -0.22
LIG1-211ENST00000596457 SASH1O94885 1247 aa13.69□□□□□ -0.22
LIG1-211ENST00000596457 ITGBL1O95965 494 aaPredicted RBP13.69□□□□□ -0.22
LIG1-211ENST00000596457 USP17L8P0C7I0 530 aa13.69□□□□□ -0.22
LIG1-211ENST00000596457 GORABQ5T7V8 394 aa13.69□□□□□ -0.22
LIG1-211ENST00000596457 KIAA0825Q8IV33 1275 aa13.69□□□□□ -0.22
LIG1-211ENST00000596457 A0A1B0GUL7 405 aa13.68□□□□□ -0.22
LIG1-211ENST00000596457 HMMRO75330 724 aa13.68□□□□□ -0.22
LIG1-211ENST00000596457 EGFRP00533 1210 aa13.68□□□□□ -0.22
LIG1-211ENST00000596457 HIRAP54198 1017 aaPredicted RBP13.68□□□□□ -0.22
LIG1-211ENST00000596457 KIF4BQ2VIQ3 1234 aa13.68□□□□□ -0.22
LIG1-211ENST00000596457 CNTROBQ8N137 903 aa13.68□□□□□ -0.22
LIG1-211ENST00000596457 XAGE2Q96GT9 111 aa13.68□□□□□ -0.22
LIG1-211ENST00000596457 GMLQ99445 158 aa13.68□□□□□ -0.22
LIG1-211ENST00000596457 HDAC9Q9UKV0 1011 aa13.68□□□□□ -0.22
LIG1-211ENST00000596457 ARAP2Q8WZ64 1704 aa13.67□□□□□ -0.22
LIG1-211ENST00000596457 MYO3BQ8WXR4 1341 aa13.67□□□□□ -0.22
LIG1-211ENST00000596457 TMEM88BA6NKF7 163 aa13.67□□□□□ -0.22
LIG1-211ENST00000596457 PHKA1P46020 1223 aa13.67□□□□□ -0.22
LIG1-211ENST00000596457 MFSD14BQ5SR56 506 aa13.67□□□□□ -0.22
LIG1-211ENST00000596457 SIRT2Q8IXJ6 389 aa13.67□□□□□ -0.22
LIG1-211ENST00000596457 OGFOD1Q8N543 542 aa13.67□□□□□ -0.22
LIG1-211ENST00000596457 CERS5Q8N5B7 392 aa13.67□□□□□ -0.22
LIG1-211ENST00000596457 MYOZ2Q9NPC6 264 aa13.67□□□□□ -0.22
LIG1-211ENST00000596457 GNL3LQ9NVN8 582 aaKnown RBP13.67□□□□□ -0.22
LIG1-211ENST00000596457 NOP58Q9Y2X3 529 aaKnown RBP13.67□□□□□ -0.22
LIG1-211ENST00000596457 POLR2AP24928 1970 aaKnown RBP13.66□□□□□ -0.22
LIG1-211ENST00000596457 RBM5P52756 815 aaKnown RBP eCLIP13.66□□□□□ -0.22
LIG1-211ENST00000596457 CCDC102BQ68D86 513 aa13.66□□□□□ -0.22
LIG1-211ENST00000596457 FAM205AQ6ZU69 1335 aa13.65□□□□□ -0.22
LIG1-211ENST00000596457 TNRC18O15417 2968 aaPredicted RBP13.65□□□□□ -0.22
LIG1-211ENST00000596457 ZNF609O15014 1411 aa13.65□□□□□ -0.22
LIG1-211ENST00000596457 CCDC85CA6NKD9 419 aa13.65□□□□□ -0.22
LIG1-211ENST00000596457 ZNF280AP59817 542 aaPredicted RBP13.65□□□□□ -0.22
LIG1-211ENST00000596457 IRX6P78412 446 aaPredicted RBP13.65□□□□□ -0.22
LIG1-211ENST00000596457 SCARF1Q14162 830 aa13.65□□□□□ -0.22
LIG1-211ENST00000596457 HSP90AB4PQ58FF6 505 aa13.65□□□□□ -0.22
LIG1-211ENST00000596457 TNNI3KQ59H18 835 aa13.65□□□□□ -0.22
LIG1-211ENST00000596457 ZC3H15Q8WU90 426 aaKnown RBP13.65□□□□□ -0.22
LIG1-211ENST00000596457 CCDC8Q9H0W5 538 aaPredicted RBP13.65□□□□□ -0.22
LIG1-211ENST00000596457 IL1RAPL2Q9NP60 686 aa13.65□□□□□ -0.22
LIG1-211ENST00000596457 FPGT-TNNI3KV9GXZ4 949 aa13.65□□□□□ -0.22
LIG1-211ENST00000596457 FMR1Q06787 632 aaKnown RBP eCLIP13.64□□□□□ -0.23
LIG1-211ENST00000596457 GRIK5Q16478 980 aa13.64□□□□□ -0.23
LIG1-211ENST00000596457 USP48Q86UV5 1035 aa13.64□□□□□ -0.23
LIG1-211ENST00000596457 ERC1Q8IUD2 1116 aa13.64□□□□□ -0.23
LIG1-211ENST00000596457 DCPSQ96C86 337 aaKnown RBP13.64□□□□□ -0.23
LIG1-211ENST00000596457 PGAP2Q9UHJ9 254 aa13.64□□□□□ -0.23
LIG1-211ENST00000596457 TTF2Q9UNY4 1162 aaKnown RBP13.64□□□□□ -0.23
LIG1-211ENST00000596457 SCAF8Q9UPN6 1271 aaKnown RBP13.64□□□□□ -0.23
LIG1-211ENST00000596457 ASTN2O75129 1339 aaPredicted RBP13.64□□□□□ -0.23
LIG1-211ENST00000596457 CTCFP49711 727 aaPredicted RBP13.63□□□□□ -0.23
LIG1-211ENST00000596457 RGS19P49795 217 aa13.63□□□□□ -0.23
LIG1-211ENST00000596457 FKBP1AP62942 108 aaKnown RBP13.63□□□□□ -0.23
LIG1-211ENST00000596457 DLGAP5Q15398 846 aa13.63□□□□□ -0.23
LIG1-211ENST00000596457 NBPF9Q3BBW0 867 aa13.63□□□□□ -0.23
LIG1-211ENST00000596457 CFAP100Q494V2 611 aa13.63□□□□□ -0.23
LIG1-211ENST00000596457 TTC39AQ5SRH9 613 aa13.63□□□□□ -0.23
LIG1-211ENST00000596457 ANGEL2Q5VTE6 544 aaKnown RBP13.63□□□□□ -0.23
LIG1-211ENST00000596457 RHPN1Q8TCX5 695 aa13.63□□□□□ -0.23
LIG1-211ENST00000596457 TBC1D22AQ8WUA7 517 aa13.63□□□□□ -0.23
LIG1-211ENST00000596457 DBNDD2Q9BQY9 259 aa13.63□□□□□ -0.23
LIG1-211ENST00000596457 GLIS2Q9BZE0 524 aaPredicted RBP13.63□□□□□ -0.23
LIG1-211ENST00000596457 GPR108Q9NPR9 543 aa13.63□□□□□ -0.23
LIG1-211ENST00000596457 DENND2AQ9ULE3 1009 aa13.63□□□□□ -0.23
LIG1-211ENST00000596457 PCDHAC2Q9Y5I4 1007 aa13.63□□□□□ -0.23
LIG1-211ENST00000596457 TRPM7Q96QT4 1865 aa13.63□□□□□ -0.23
LIG1-211ENST00000596457 CNTNAP1P78357 1384 aa13.62□□□□□ -0.23
LIG1-211ENST00000596457 TRAF5O00463 557 aa13.62□□□□□ -0.23
LIG1-211ENST00000596457 CCDC158Q5M9N0 1113 aa13.62□□□□□ -0.23
LIG1-211ENST00000596457 DLK2Q6UY11 383 aa13.62□□□□□ -0.23
LIG1-211ENST00000596457 AACSQ86V21 672 aa13.62□□□□□ -0.23
LIG1-211ENST00000596457 EXOC6Q8TAG9 804 aa13.62□□□□□ -0.23
LIG1-211ENST00000596457 WDR66Q8TBY9 1149 aa13.62□□□□□ -0.23
LIG1-211ENST00000596457 AIDAQ96BJ3 306 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms