RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 HMG20BQ9P0W2 317 aa13.02□□□□□ -0.33
LIG1-210ENST00000596332 JAG2Q9Y219 1238 aa13.02□□□□□ -0.33
LIG1-210ENST00000596332 EIF6P56537 245 aaKnown RBP13.01□□□□□ -0.33
LIG1-210ENST00000596332 NUCB1Q02818 461 aa13.01□□□□□ -0.33
LIG1-210ENST00000596332 CAVIN4Q5BKX8 364 aa13.01□□□□□ -0.33
LIG1-210ENST00000596332 ANKRD45Q5TZF3 282 aa13.01□□□□□ -0.33
LIG1-210ENST00000596332 RSBN1LQ6PCB5 846 aaPredicted RBP13.01□□□□□ -0.33
LIG1-210ENST00000596332 ZNF384Q8TF68 577 aa13.01□□□□□ -0.33
LIG1-210ENST00000596332 NMRK2Q9NPI5 230 aa13.01□□□□□ -0.33
LIG1-210ENST00000596332 WDR90Q96KV7 1748 aa13.01□□□□□ -0.33
LIG1-210ENST00000596332 EGFRP00533 1210 aa13□□□□□ -0.33
LIG1-210ENST00000596332 YY1P25490 414 aa13□□□□□ -0.33
LIG1-210ENST00000596332 PDE4AP27815 886 aa13□□□□□ -0.33
LIG1-210ENST00000596332 EPS15P42566 896 aa13□□□□□ -0.33
LIG1-210ENST00000596332 GMPSP49915 693 aaPredicted RBP13□□□□□ -0.33
LIG1-210ENST00000596332 FKBP1AP62942 108 aaKnown RBP13□□□□□ -0.33
LIG1-210ENST00000596332 TNIP1Q15025 636 aa13□□□□□ -0.33
LIG1-210ENST00000596332 CLASRPQ8N2M8 674 aaKnown RBP13□□□□□ -0.33
LIG1-210ENST00000596332 ZNF784Q8NCA9 323 aaPredicted RBP13□□□□□ -0.33
LIG1-210ENST00000596332 DPF2Q92785 391 aa13□□□□□ -0.33
LIG1-210ENST00000596332 NDUFB9Q9Y6M9 179 aa13□□□□□ -0.33
LIG1-210ENST00000596332 AKAP11Q9UKA4 1901 aa13□□□□□ -0.33
LIG1-210ENST00000596332 PDS5AQ29RF7 1337 aaKnown RBP12.99□□□□□ -0.33
LIG1-210ENST00000596332 SALL1Q9NSC2 1324 aa12.99□□□□□ -0.33
LIG1-210ENST00000596332 KIF3CO14782 793 aa12.99□□□□□ -0.33
LIG1-210ENST00000596332 SEMA3EO15041 775 aa12.99□□□□□ -0.33
LIG1-210ENST00000596332 HIRAP54198 1017 aaPredicted RBP12.99□□□□□ -0.33
LIG1-210ENST00000596332 ZNF280AP59817 542 aaPredicted RBP12.99□□□□□ -0.33
LIG1-210ENST00000596332 ERICH6BQ5W0A0 696 aa12.99□□□□□ -0.33
LIG1-210ENST00000596332 DPY19L2Q6NUT2 758 aa12.99□□□□□ -0.33
LIG1-210ENST00000596332 ZBED3Q96IU2 234 aaPredicted RBP12.99□□□□□ -0.33
LIG1-210ENST00000596332 RRAGCQ9HB90 399 aa12.99□□□□□ -0.33
LIG1-210ENST00000596332 GPRC5DQ9NZD1 345 aa12.99□□□□□ -0.33
LIG1-210ENST00000596332 PCDHAC2Q9Y5I4 1007 aa12.99□□□□□ -0.33
LIG1-210ENST00000596332 GJA3Q9Y6H8 435 aa12.99□□□□□ -0.33
LIG1-210ENST00000596332 AOX1Q06278 1338 aa12.98□□□□□ -0.33
LIG1-210ENST00000596332 CYP2E1P05181 493 aaPredicted RBP12.98□□□□□ -0.33
LIG1-210ENST00000596332 ATP5JP18859 108 aa12.98□□□□□ -0.33
LIG1-210ENST00000596332 ZAP70P43403 619 aa12.98□□□□□ -0.33
LIG1-210ENST00000596332 B4GALNT3Q6L9W6 998 aa12.98□□□□□ -0.33
LIG1-210ENST00000596332 TBC1D9Q6ZT07 1266 aa12.98□□□□□ -0.33
LIG1-210ENST00000596332 CHD1LQ86WJ1 897 aa12.98□□□□□ -0.33
LIG1-210ENST00000596332 SPATA5Q8NB90 893 aa12.98□□□□□ -0.33
LIG1-210ENST00000596332 AGBL3Q8NEM8 1001 aa12.98□□□□□ -0.33
LIG1-210ENST00000596332 PI4K2BQ8TCG2 481 aa12.98□□□□□ -0.33
LIG1-210ENST00000596332 SNRKQ9NRH2 765 aa12.98□□□□□ -0.33
LIG1-210ENST00000596332 STAP2Q9UGK3 403 aa12.98□□□□□ -0.33
LIG1-210ENST00000596332 G3V3G9 751 aa12.97□□□□□ -0.33
LIG1-210ENST00000596332 POTEIP0CG38 1075 aa12.97□□□□□ -0.33
LIG1-210ENST00000596332 POTEJP0CG39 1038 aa12.97□□□□□ -0.33
LIG1-210ENST00000596332 RPS12P25398 132 aaKnown RBP12.97□□□□□ -0.33
LIG1-210ENST00000596332 PRDX5P30044 214 aa12.97□□□□□ -0.33
LIG1-210ENST00000596332 DCAF8Q5TAQ9 597 aa12.97□□□□□ -0.33
LIG1-210ENST00000596332 TSHZ3Q63HK5 1081 aa12.97□□□□□ -0.33
LIG1-210ENST00000596332 SKAP1Q86WV1 359 aa12.97□□□□□ -0.33
LIG1-210ENST00000596332 VPS37DQ86XT2 251 aa12.97□□□□□ -0.33
LIG1-210ENST00000596332 PLEKHM2Q8IWE5 1019 aa12.97□□□□□ -0.33
LIG1-210ENST00000596332 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.97□□□□□ -0.33
LIG1-210ENST00000596332 EDC3Q96F86 508 aaKnown RBP12.97□□□□□ -0.33
LIG1-210ENST00000596332 LNPKQ9C0E8 428 aa12.97□□□□□ -0.33
LIG1-210ENST00000596332 TAF1DQ9H5J8 278 aaPredicted RBP12.97□□□□□ -0.33
LIG1-210ENST00000596332 ANTXR1Q9H6X2 564 aa12.97□□□□□ -0.33
LIG1-210ENST00000596332 PIH1D3Q9NQM4 214 aaKnown RBP12.97□□□□□ -0.33
LIG1-210ENST00000596332 CNOT7Q9UIV1 285 aaKnown RBP12.97□□□□□ -0.33
LIG1-210ENST00000596332 DENND2AQ9ULE3 1009 aa12.97□□□□□ -0.33
LIG1-210ENST00000596332 IFIT2P09913 472 aaKnown RBP12.96□□□□□ -0.33
LIG1-210ENST00000596332 UQCRFS1P1P0C7P4 283 aa12.96□□□□□ -0.33
LIG1-210ENST00000596332 CHAF1AQ13111 956 aaPredicted RBP12.96□□□□□ -0.33
LIG1-210ENST00000596332 CCDC158Q5M9N0 1113 aa12.96□□□□□ -0.33
LIG1-210ENST00000596332 MFSD14BQ5SR56 506 aa12.96□□□□□ -0.33
LIG1-210ENST00000596332 TRPM4Q8TD43 1214 aa12.96□□□□□ -0.33
LIG1-210ENST00000596332 ZNF526Q8TF50 670 aaPredicted RBP12.96□□□□□ -0.33
LIG1-210ENST00000596332 NPM3O75607 178 aaKnown RBP12.95□□□□□ -0.34
LIG1-210ENST00000596332 PDE1AP54750 535 aa12.95□□□□□ -0.34
LIG1-210ENST00000596332 TTC39AQ5SRH9 613 aa12.95□□□□□ -0.34
LIG1-210ENST00000596332 GORABQ5T7V8 394 aa12.95□□□□□ -0.34
LIG1-210ENST00000596332 SAMD7Q7Z3H4 446 aa12.95□□□□□ -0.34
LIG1-210ENST00000596332 KIAA0825Q8IV33 1275 aa12.95□□□□□ -0.34
LIG1-210ENST00000596332 MICALL2Q8IY33 904 aa12.95□□□□□ -0.34
LIG1-210ENST00000596332 WDR66Q8TBY9 1149 aa12.95□□□□□ -0.34
LIG1-210ENST00000596332 MRIQ9BWK5 157 aa12.95□□□□□ -0.34
LIG1-210ENST00000596332 ECHDC1Q9NTX5 307 aa12.95□□□□□ -0.34
LIG1-210ENST00000596332 GNL3LQ9NVN8 582 aaKnown RBP12.95□□□□□ -0.34
LIG1-210ENST00000596332 PGAP2Q9UHJ9 254 aa12.95□□□□□ -0.34
LIG1-210ENST00000596332 ADAMTSL1Q8N6G6 1762 aa12.94□□□□□ -0.34
LIG1-210ENST00000596332 ASTN2O75129 1339 aaPredicted RBP12.94□□□□□ -0.34
LIG1-210ENST00000596332 CHGBP05060 677 aa12.94□□□□□ -0.34
LIG1-210ENST00000596332 USP17L8P0C7I0 530 aa12.94□□□□□ -0.34
LIG1-210ENST00000596332 VEGFAP15692 232 aaPredicted RBP12.94□□□□□ -0.34
LIG1-210ENST00000596332 MTMR14Q8NCE2 650 aa12.94□□□□□ -0.34
LIG1-210ENST00000596332 HAUS7Q99871 368 aa12.94□□□□□ -0.34
LIG1-210ENST00000596332 BCL11AQ9H165 835 aa12.94□□□□□ -0.34
LIG1-210ENST00000596332 BOLA2Q9H3K6 86 aa12.94□□□□□ -0.34
LIG1-210ENST00000596332 OSBPL3Q9H4L5 887 aa12.94□□□□□ -0.34
LIG1-210ENST00000596332 PPP4R2Q9NY27 417 aa12.94□□□□□ -0.34
LIG1-210ENST00000596332 HACL1Q9UJ83 578 aa12.94□□□□□ -0.34
LIG1-210ENST00000596332 MYO3BQ8WXR4 1341 aa12.93□□□□□ -0.34
LIG1-210ENST00000596332 MX1P20591 662 aa12.93□□□□□ -0.34
LIG1-210ENST00000596332 EPHX2P34913 555 aa12.93□□□□□ -0.34
LIG1-210ENST00000596332 CENPQQ7L2Z9 268 aaPredicted RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms