RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 CELF2O95319 508 aaKnown RBP18.89■□□□□ 0.61
TRIM28-205ENST00000595028 GTF2IP78347 998 aa18.89■□□□□ 0.61
TRIM28-205ENST00000595028 METTL24Q5JXM2 366 aa18.89■□□□□ 0.61
TRIM28-205ENST00000595028 ZKSCAN2Q63HK3 967 aa18.89■□□□□ 0.61
TRIM28-205ENST00000595028 TTLL5Q6EMB2 1281 aa18.89■□□□□ 0.61
TRIM28-205ENST00000595028 VGLL2Q8N8G2 317 aa18.89■□□□□ 0.61
TRIM28-205ENST00000595028 MYOZ2Q9NPC6 264 aa18.89■□□□□ 0.61
TRIM28-205ENST00000595028 GGA3Q9NZ52 723 aa18.89■□□□□ 0.61
TRIM28-205ENST00000595028 PTPN12Q05209 780 aaKnown RBP18.88■□□□□ 0.61
TRIM28-205ENST00000595028 PRPF38BQ5VTL8 546 aaKnown RBP18.88■□□□□ 0.61
TRIM28-205ENST00000595028 HHIPL1Q96JK4 782 aa18.88■□□□□ 0.61
TRIM28-205ENST00000595028 EYA2O00167 538 aa18.87■□□□□ 0.61
TRIM28-205ENST00000595028 ASTN2O75129 1339 aaPredicted RBP18.87■□□□□ 0.61
TRIM28-205ENST00000595028 GNAI3P08754 354 aa18.87■□□□□ 0.61
TRIM28-205ENST00000595028 KRT26Q7Z3Y9 468 aa18.87■□□□□ 0.61
TRIM28-205ENST00000595028 CLUAP1Q96AJ1 413 aa18.87■□□□□ 0.61
TRIM28-205ENST00000595028 DCPSQ96C86 337 aaKnown RBP18.87■□□□□ 0.61
TRIM28-205ENST00000595028 MYH13Q9UKX3 1938 aa18.86■□□□□ 0.61
TRIM28-205ENST00000595028 ECM29Q5VYK3 1845 aa18.86■□□□□ 0.61
TRIM28-205ENST00000595028 PDE8BO95263 885 aa18.86■□□□□ 0.61
TRIM28-205ENST00000595028 GYG1P46976 350 aa18.86■□□□□ 0.61
TRIM28-205ENST00000595028 OGFOD1Q8N543 542 aa18.86■□□□□ 0.61
TRIM28-205ENST00000595028 CERS5Q8N5B7 392 aa18.86■□□□□ 0.61
TRIM28-205ENST00000595028 ADM5C9JUS6 153 aa18.85■□□□□ 0.61
TRIM28-205ENST00000595028 HIBADHP31937 336 aaKnown RBP18.85■□□□□ 0.61
TRIM28-205ENST00000595028 MMP14P50281 582 aa18.85■□□□□ 0.61
TRIM28-205ENST00000595028 SCARF1Q14162 830 aa18.85■□□□□ 0.61
TRIM28-205ENST00000595028 ANGEL2Q5VTE6 544 aaKnown RBP18.85■□□□□ 0.61
TRIM28-205ENST00000595028 USP48Q86UV5 1035 aa18.85■□□□□ 0.61
TRIM28-205ENST00000595028 KIAA0825Q8IV33 1275 aa18.85■□□□□ 0.61
TRIM28-205ENST00000595028 FAM84BQ96KN1 310 aaPredicted RBP18.85■□□□□ 0.61
TRIM28-205ENST00000595028 ZIC5Q96T25 663 aa18.85■□□□□ 0.61
TRIM28-205ENST00000595028 FBXO3Q9UK99 471 aa18.85■□□□□ 0.61
TRIM28-205ENST00000595028 FAM205AQ6ZU69 1335 aa18.84■□□□□ 0.61
TRIM28-205ENST00000595028 PITPNM2Q9BZ72 1349 aa18.84■□□□□ 0.61
TRIM28-205ENST00000595028 CIAO1O76071 339 aa18.84■□□□□ 0.61
TRIM28-205ENST00000595028 FKBP1AP62942 108 aaKnown RBP18.84■□□□□ 0.61
TRIM28-205ENST00000595028 PUM3Q15397 648 aaKnown RBP18.84■□□□□ 0.61
TRIM28-205ENST00000595028 ATG9AQ7Z3C6 839 aa18.84■□□□□ 0.61
TRIM28-205ENST00000595028 SULF1Q8IWU6 871 aa18.84■□□□□ 0.61
TRIM28-205ENST00000595028 TMEM57Q8N5G2 664 aa18.84■□□□□ 0.61
TRIM28-205ENST00000595028 TDRD7Q8NHU6 1098 aaKnown RBP18.84■□□□□ 0.61
TRIM28-205ENST00000595028 HDAC9Q9UKV0 1011 aa18.84■□□□□ 0.61
TRIM28-205ENST00000595028 SASH1O94885 1247 aa18.83■□□□□ 0.6
TRIM28-205ENST00000595028 MTX1Q13505 466 aa18.83■□□□□ 0.6
TRIM28-205ENST00000595028 DLK2Q6UY11 383 aa18.83■□□□□ 0.6
TRIM28-205ENST00000595028 SIL1Q9H173 461 aa18.83■□□□□ 0.6
TRIM28-205ENST00000595028 ZNF408Q9H9D4 720 aa18.83■□□□□ 0.6
TRIM28-205ENST00000595028 JAG2Q9Y219 1238 aa18.83■□□□□ 0.6
TRIM28-205ENST00000595028 WNT10BO00744 389 aa18.82■□□□□ 0.6
TRIM28-205ENST00000595028 FGFR2P21802 821 aa18.82■□□□□ 0.6
TRIM28-205ENST00000595028 NOGQ13253 232 aa18.82■□□□□ 0.6
TRIM28-205ENST00000595028 NBPF9Q3BBW0 867 aa18.82■□□□□ 0.6
TRIM28-205ENST00000595028 FBXO33Q7Z6M2 555 aa18.82■□□□□ 0.6
TRIM28-205ENST00000595028 FTSJ3Q8IY81 847 aaKnown RBP18.82■□□□□ 0.6
TRIM28-205ENST00000595028 COPRSQ9NQ92 184 aa18.82■□□□□ 0.6
TRIM28-205ENST00000595028 PA2G4Q9UQ80 394 aaKnown RBP18.82■□□□□ 0.6
TRIM28-205ENST00000595028 GNAI2P04899 355 aa18.81■□□□□ 0.6
TRIM28-205ENST00000595028 VPS37DQ86XT2 251 aa18.81■□□□□ 0.6
TRIM28-205ENST00000595028 ZBED3Q96IU2 234 aaPredicted RBP18.81■□□□□ 0.6
TRIM28-205ENST00000595028 SRGAP3O43295 1099 aa18.8■□□□□ 0.6
TRIM28-205ENST00000595028 IFIT1P09914 478 aaKnown RBP18.8■□□□□ 0.6
TRIM28-205ENST00000595028 IL15P40933 162 aaPredicted RBP18.8■□□□□ 0.6
TRIM28-205ENST00000595028 CAVIN4Q5BKX8 364 aa18.8■□□□□ 0.6
TRIM28-205ENST00000595028 MFSD14BQ5SR56 506 aa18.8■□□□□ 0.6
TRIM28-205ENST00000595028 DZIP1LQ8IYY4 767 aaKnown RBP18.8■□□□□ 0.6
TRIM28-205ENST00000595028 LPIN2Q92539 896 aa18.8■□□□□ 0.6
TRIM28-205ENST00000595028 PAPPA2Q9BXP8 1791 aa18.79■□□□□ 0.6
TRIM28-205ENST00000595028 RLBP1P12271 317 aa18.79■□□□□ 0.6
TRIM28-205ENST00000595028 SLC5A1P13866 664 aa18.79■□□□□ 0.6
TRIM28-205ENST00000595028 CDCA5Q96FF9 252 aa18.79■□□□□ 0.6
TRIM28-205ENST00000595028 F8W031 263 aaPredicted RBP18.78■□□□□ 0.6
TRIM28-205ENST00000595028 ATP2B3Q16720 1220 aa18.78■□□□□ 0.6
TRIM28-205ENST00000595028 ITPRIPQ8IWB1 547 aa18.78■□□□□ 0.6
TRIM28-205ENST00000595028 MTMR14Q8NCE2 650 aa18.78■□□□□ 0.6
TRIM28-205ENST00000595028 GBA2Q9HCG7 927 aaPredicted RBP18.78■□□□□ 0.6
TRIM28-205ENST00000595028 CEP126Q9P2H0 1117 aa18.78■□□□□ 0.6
TRIM28-205ENST00000595028 IQSEC3Q9UPP2 1182 aaPredicted RBP18.78■□□□□ 0.6
TRIM28-205ENST00000595028 COL1A1P02452 1464 aaPredicted RBP18.77■□□□□ 0.6
TRIM28-205ENST00000595028 BCAMP50895 628 aa18.77■□□□□ 0.6
TRIM28-205ENST00000595028 HUNKP57058 714 aa18.77■□□□□ 0.6
TRIM28-205ENST00000595028 DLGAP5Q15398 846 aa18.77■□□□□ 0.6
TRIM28-205ENST00000595028 CHAF1AQ13111 956 aaPredicted RBP18.76■□□□□ 0.59
TRIM28-205ENST00000595028 APOBEC3FQ8IUX4 373 aaKnown RBP18.76■□□□□ 0.59
TRIM28-205ENST00000595028 SAGE1Q9NXZ1 904 aa18.76■□□□□ 0.59
TRIM28-205ENST00000595028 SCAF8Q9UPN6 1271 aaKnown RBP18.76■□□□□ 0.59
TRIM28-205ENST00000595028 PNMA6EA0A0J9YXQ4 647 aa18.75■□□□□ 0.59
TRIM28-205ENST00000595028 SPDYE2BA6NHP3 402 aa18.75■□□□□ 0.59
TRIM28-205ENST00000595028 FRAT2O75474 233 aaPredicted RBP18.75■□□□□ 0.59
TRIM28-205ENST00000595028 SPDYE6P0CI01 402 aa18.75■□□□□ 0.59
TRIM28-205ENST00000595028 CFAP100Q494V2 611 aa18.75■□□□□ 0.59
TRIM28-205ENST00000595028 C2orf69Q8N8R5 385 aa18.75■□□□□ 0.59
TRIM28-205ENST00000595028 TBC1D22AQ8WUA7 517 aa18.75■□□□□ 0.59
TRIM28-205ENST00000595028 TTF2Q9UNY4 1162 aaKnown RBP18.75■□□□□ 0.59
TRIM28-205ENST00000595028 PCDHAC2Q9Y5I4 1007 aa18.75■□□□□ 0.59
TRIM28-205ENST00000595028 FAM155AB1AL88 458 aaPredicted RBP18.74■□□□□ 0.59
TRIM28-205ENST00000595028 AKAP11Q9UKA4 1901 aa18.73■□□□□ 0.59
TRIM28-205ENST00000595028 TRPA1O75762 1119 aa18.73■□□□□ 0.59
TRIM28-205ENST00000595028 PANK1Q8TE04 598 aa18.73■□□□□ 0.59
TRIM28-205ENST00000595028 C1orf115Q9H7X2 142 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms