RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 MAST3O60307 1309 aa17.3■□□□□ 0.36
SMARCA4-219ENST00000592604 A0A1B0GVL5 298 aa17.3■□□□□ 0.36
SMARCA4-219ENST00000592604 RNF113AO15541 343 aaKnown RBP17.3■□□□□ 0.36
SMARCA4-219ENST00000592604 YEATS4O95619 227 aa17.3■□□□□ 0.36
SMARCA4-219ENST00000592604 DHX8Q14562 1220 aaKnown RBP17.3■□□□□ 0.36
SMARCA4-219ENST00000592604 ERCC4Q92889 916 aaPredicted RBP17.3■□□□□ 0.36
SMARCA4-219ENST00000592604 NEUROD6Q96NK8 337 aa17.3■□□□□ 0.36
SMARCA4-219ENST00000592604 POLR3EQ9NVU0 708 aa17.3■□□□□ 0.36
SMARCA4-219ENST00000592604 NEDD4P46934 1319 aa17.29■□□□□ 0.36
SMARCA4-219ENST00000592604 NDUFA8P51970 172 aa17.29■□□□□ 0.36
SMARCA4-219ENST00000592604 IFNL2Q8IZJ0 200 aa17.29■□□□□ 0.36
SMARCA4-219ENST00000592604 KCNG4Q8TDN1 519 aa17.29■□□□□ 0.36
SMARCA4-219ENST00000592604 FMNL2Q96PY5 1086 aa17.29■□□□□ 0.36
SMARCA4-219ENST00000592604 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.29■□□□□ 0.36
SMARCA4-219ENST00000592604 SLU7O95391 586 aaKnown RBP17.29■□□□□ 0.36
SMARCA4-219ENST00000592604 TATP17735 454 aaPredicted RBP17.29■□□□□ 0.36
SMARCA4-219ENST00000592604 IL15P40933 162 aaPredicted RBP17.29■□□□□ 0.36
SMARCA4-219ENST00000592604 PIP4K2AP48426 406 aaPredicted RBP17.29■□□□□ 0.36
SMARCA4-219ENST00000592604 TTC5Q8N0Z6 440 aa17.29■□□□□ 0.36
SMARCA4-219ENST00000592604 TIMM10P62072 90 aa17.28■□□□□ 0.36
SMARCA4-219ENST00000592604 LMOD2Q6P5Q4 547 aa17.28■□□□□ 0.36
SMARCA4-219ENST00000592604 CCDC150Q8NCX0 1101 aa17.28■□□□□ 0.36
SMARCA4-219ENST00000592604 L2HGDHQ9H9P8 463 aa17.28■□□□□ 0.36
SMARCA4-219ENST00000592604 MST1RQ04912 1400 aa17.28■□□□□ 0.36
SMARCA4-219ENST00000592604 PSDA5PKW4 1024 aaPredicted RBP17.28■□□□□ 0.36
SMARCA4-219ENST00000592604 E4F1Q66K89 784 aaPredicted RBP17.28■□□□□ 0.36
SMARCA4-219ENST00000592604 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.28■□□□□ 0.36
SMARCA4-219ENST00000592604 TUBB4AP04350 444 aa17.27■□□□□ 0.36
SMARCA4-219ENST00000592604 DPCR1Q3MIW9 517 aa17.27■□□□□ 0.36
SMARCA4-219ENST00000592604 CHST3Q7LGC8 479 aa17.27■□□□□ 0.36
SMARCA4-219ENST00000592604 CLIC4Q9Y696 253 aa17.27■□□□□ 0.36
SMARCA4-219ENST00000592604 STK38Q15208 465 aa17.27■□□□□ 0.36
SMARCA4-219ENST00000592604 DCAF5Q96JK2 942 aa17.27■□□□□ 0.36
SMARCA4-219ENST00000592604 XPO4Q9C0E2 1151 aaKnown RBP17.27■□□□□ 0.36
SMARCA4-219ENST00000592604 CCDC9Q9Y3X0 531 aaKnown RBP17.27■□□□□ 0.36
SMARCA4-219ENST00000592604 PLEKHG2Q9H7P9 1386 aa17.27■□□□□ 0.35
SMARCA4-219ENST00000592604 BRAPQ7Z569 592 aa17.27■□□□□ 0.35
SMARCA4-219ENST00000592604 KRT222Q8N1A0 295 aa17.27■□□□□ 0.35
SMARCA4-219ENST00000592604 FBXO18Q8NFZ0 1043 aa17.27■□□□□ 0.35
SMARCA4-219ENST00000592604 SPTLC2O15270 562 aa17.26■□□□□ 0.35
SMARCA4-219ENST00000592604 PPFIA3O75145 1194 aa17.26■□□□□ 0.35
SMARCA4-219ENST00000592604 IFIT1P09914 478 aaKnown RBP17.26■□□□□ 0.35
SMARCA4-219ENST00000592604 SLFN14P0C7P3 912 aa17.26■□□□□ 0.35
SMARCA4-219ENST00000592604 NLRP12P59046 1061 aa17.26■□□□□ 0.35
SMARCA4-219ENST00000592604 SF3A1Q15459 793 aaKnown RBP17.26■□□□□ 0.35
SMARCA4-219ENST00000592604 ARMCX5Q6P1M9 558 aa17.26■□□□□ 0.35
SMARCA4-219ENST00000592604 KRT28Q7Z3Y7 464 aa17.26■□□□□ 0.35
SMARCA4-219ENST00000592604 RGS22Q8NE09 1264 aa17.26■□□□□ 0.35
SMARCA4-219ENST00000592604 C8orf76Q96K31 380 aa17.26■□□□□ 0.35
SMARCA4-219ENST00000592604 TMEM51Q9NW97 253 aa17.26■□□□□ 0.35
SMARCA4-219ENST00000592604 ZRSR1Q15695 479 aaKnown RBP17.26■□□□□ 0.35
SMARCA4-219ENST00000592604 FBXO38Q6PIJ6 1188 aa17.26■□□□□ 0.35
SMARCA4-219ENST00000592604 M0R2C6 588 aa17.25■□□□□ 0.35
SMARCA4-219ENST00000592604 DHX16O60231 1041 aaKnown RBP17.25■□□□□ 0.35
SMARCA4-219ENST00000592604 NCAPHQ15003 741 aa17.25■□□□□ 0.35
SMARCA4-219ENST00000592604 ELF2Q15723 593 aa17.25■□□□□ 0.35
SMARCA4-219ENST00000592604 MYSM1Q5VVJ2 828 aa17.25■□□□□ 0.35
SMARCA4-219ENST00000592604 TTLL5Q6EMB2 1281 aa17.25■□□□□ 0.35
SMARCA4-219ENST00000592604 PPP1R13BQ96KQ4 1090 aa17.25■□□□□ 0.35
SMARCA4-219ENST00000592604 NLRP2Q9NX02 1062 aa17.25■□□□□ 0.35
SMARCA4-219ENST00000592604 IFNKQ9P0W0 207 aa17.25■□□□□ 0.35
SMARCA4-219ENST00000592604 MEGF6O75095 1541 aa17.25■□□□□ 0.35
SMARCA4-219ENST00000592604 KIF1AQ12756 1690 aa17.25■□□□□ 0.35
SMARCA4-219ENST00000592604 LAMB4A4D0S4 1761 aa17.25■□□□□ 0.35
SMARCA4-219ENST00000592604 EYA2O00167 538 aa17.25■□□□□ 0.35
SMARCA4-219ENST00000592604 IGSF3O75054 1194 aa17.25■□□□□ 0.35
SMARCA4-219ENST00000592604 SLC3A2P08195 630 aaKnown RBP17.25■□□□□ 0.35
SMARCA4-219ENST00000592604 CCDC93Q567U6 631 aa17.25■□□□□ 0.35
SMARCA4-219ENST00000592604 FBXW7Q969H0 707 aa17.25■□□□□ 0.35
SMARCA4-219ENST00000592604 NWD2Q9ULI1 1742 aa17.25■□□□□ 0.35
SMARCA4-219ENST00000592604 ZNF202O95125 648 aa17.24■□□□□ 0.35
SMARCA4-219ENST00000592604 TPM4P67936 248 aa17.24■□□□□ 0.35
SMARCA4-219ENST00000592604 OTUD7BQ6GQQ9 843 aa17.24■□□□□ 0.35
SMARCA4-219ENST00000592604 TMC6Q7Z403 805 aa17.24■□□□□ 0.35
SMARCA4-219ENST00000592604 OSBP2Q969R2 916 aa17.24■□□□□ 0.35
SMARCA4-219ENST00000592604 ATG3Q9NT62 314 aa17.24■□□□□ 0.35
SMARCA4-219ENST00000592604 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.24■□□□□ 0.35
SMARCA4-219ENST00000592604 V9GYY5 206 aaPredicted RBP17.24■□□□□ 0.35
SMARCA4-219ENST00000592604 GLI3P10071 1580 aa17.24■□□□□ 0.35
SMARCA4-219ENST00000592604 CIAO1O76071 339 aa17.24■□□□□ 0.35
SMARCA4-219ENST00000592604 SFPQP23246 707 aaKnown RBP eCLIP17.24■□□□□ 0.35
SMARCA4-219ENST00000592604 CMA1P23946 247 aa17.24■□□□□ 0.35
SMARCA4-219ENST00000592604 AXDND1Q5T1B0 1012 aaPredicted RBP17.24■□□□□ 0.35
SMARCA4-219ENST00000592604 GPHNQ9NQX3 736 aaPredicted RBP17.24■□□□□ 0.35
SMARCA4-219ENST00000592604 IKBKBO14920 756 aa17.24■□□□□ 0.35
SMARCA4-219ENST00000592604 SMC2O95347 1197 aa17.24■□□□□ 0.35
SMARCA4-219ENST00000592604 POLR3DP05423 398 aaPredicted RBP17.24■□□□□ 0.35
SMARCA4-219ENST00000592604 HPS5Q9UPZ3 1129 aa17.24■□□□□ 0.35
SMARCA4-219ENST00000592604 A0A1B0GUL7 405 aa17.23■□□□□ 0.35
SMARCA4-219ENST00000592604 FOXP2O15409 715 aa17.23■□□□□ 0.35
SMARCA4-219ENST00000592604 ZC3H6P61129 1189 aaKnown RBP17.23■□□□□ 0.35
SMARCA4-219ENST00000592604 ZNF771Q7L3S4 317 aaPredicted RBP17.23■□□□□ 0.35
SMARCA4-219ENST00000592604 CWC25Q9NXE8 425 aaPredicted RBP17.23■□□□□ 0.35
SMARCA4-219ENST00000592604 ORC3Q9UBD5 711 aaPredicted RBP17.23■□□□□ 0.35
SMARCA4-219ENST00000592604 DDX60Q8IY21 1712 aaKnown RBP17.23■□□□□ 0.35
SMARCA4-219ENST00000592604 CYP27B1O15528 508 aa17.23■□□□□ 0.35
SMARCA4-219ENST00000592604 TERF2Q15554 542 aa17.23■□□□□ 0.35
SMARCA4-219ENST00000592604 LRRFIP1Q32MZ4 808 aaKnown RBP17.23■□□□□ 0.35
SMARCA4-219ENST00000592604 LRRC24Q50LG9 513 aa17.23■□□□□ 0.35
SMARCA4-219ENST00000592604 MB21D2Q8IYB1 491 aaPredicted RBP17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms