RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 CHMP3Q9Y3E7 222 aa13.17□□□□□ -0.3
LIG3-212ENST00000590181 A0A1B0GUL6 1792 aa13.17□□□□□ -0.3
LIG3-212ENST00000590181 PITPNM2Q9BZ72 1349 aa13.16□□□□□ -0.3
LIG3-212ENST00000590181 NBPF7P0C2Y1 421 aaPredicted RBP13.16□□□□□ -0.3
LIG3-212ENST00000590181 RARSP54136 660 aaKnown RBP13.16□□□□□ -0.3
LIG3-212ENST00000590181 SCARF1Q14162 830 aa13.16□□□□□ -0.3
LIG3-212ENST00000590181 GMLQ99445 158 aa13.16□□□□□ -0.3
LIG3-212ENST00000590181 USP44Q9H0E7 712 aa13.16□□□□□ -0.3
LIG3-212ENST00000590181 HDAC9Q9UKV0 1011 aa13.16□□□□□ -0.3
LIG3-212ENST00000590181 TTLL5Q6EMB2 1281 aa13.15□□□□□ -0.3
LIG3-212ENST00000590181 MYOZ2Q9NPC6 264 aa13.15□□□□□ -0.3
LIG3-212ENST00000590181 IL1R1P14778 569 aa13.14□□□□□ -0.31
LIG3-212ENST00000590181 MOB2Q70IA6 237 aa13.14□□□□□ -0.31
LIG3-212ENST00000590181 MIER1Q8N108 512 aa13.14□□□□□ -0.31
LIG3-212ENST00000590181 ZNF296Q8WUU4 475 aaPredicted RBP13.14□□□□□ -0.31
LIG3-212ENST00000590181 SCAF8Q9UPN6 1271 aaKnown RBP13.14□□□□□ -0.31
LIG3-212ENST00000590181 OTOFQ9HC10 1997 aa13.14□□□□□ -0.31
LIG3-212ENST00000590181 SASH1O94885 1247 aa13.13□□□□□ -0.31
LIG3-212ENST00000590181 TBC1D8O95759 1140 aa13.13□□□□□ -0.31
LIG3-212ENST00000590181 GNAI3P08754 354 aa13.13□□□□□ -0.31
LIG3-212ENST00000590181 UBTFL1P0CB47 393 aaPredicted RBP13.13□□□□□ -0.31
LIG3-212ENST00000590181 TTLL12Q14166 644 aaPredicted RBP13.13□□□□□ -0.31
LIG3-212ENST00000590181 PKN2Q16513 984 aaKnown RBP13.13□□□□□ -0.31
LIG3-212ENST00000590181 DACT2Q5SW24 774 aa13.13□□□□□ -0.31
LIG3-212ENST00000590181 INTS3Q68E01 1043 aaKnown RBP13.13□□□□□ -0.31
LIG3-212ENST00000590181 SUCLG2Q96I99 432 aa13.13□□□□□ -0.31
LIG3-212ENST00000590181 BICC1Q9H694 974 aaKnown RBP13.13□□□□□ -0.31
LIG3-212ENST00000590181 CD209Q9NNX6 404 aa13.13□□□□□ -0.31
LIG3-212ENST00000590181 NOB1Q9ULX3 412 aaKnown RBP13.13□□□□□ -0.31
LIG3-212ENST00000590181 RIPOR2Q9Y4F9 1068 aa13.13□□□□□ -0.31
LIG3-212ENST00000590181 CAVIN4Q5BKX8 364 aa13.12□□□□□ -0.31
LIG3-212ENST00000590181 EPHA10Q5JZY3 1008 aa13.12□□□□□ -0.31
LIG3-212ENST00000590181 KAZALD1Q96I82 304 aa13.12□□□□□ -0.31
LIG3-212ENST00000590181 CENPFP49454 3210 aa13.11□□□□□ -0.31
LIG3-212ENST00000590181 UBE2Q2LH0YL09 131 aa13.11□□□□□ -0.31
LIG3-212ENST00000590181 ZBTB22O15209 634 aa13.11□□□□□ -0.31
LIG3-212ENST00000590181 MKRN3Q13064 507 aaKnown RBP13.11□□□□□ -0.31
LIG3-212ENST00000590181 MTMR14Q8NCE2 650 aa13.11□□□□□ -0.31
LIG3-212ENST00000590181 MKI67P46013 3256 aaKnown RBP13.11□□□□□ -0.31
LIG3-212ENST00000590181 ZBED9Q6R2W3 1325 aa13.11□□□□□ -0.31
LIG3-212ENST00000590181 GPR25O00155 361 aa13.1□□□□□ -0.31
LIG3-212ENST00000590181 CIAO1O76071 339 aa13.1□□□□□ -0.31
LIG3-212ENST00000590181 PDE8BO95263 885 aa13.1□□□□□ -0.31
LIG3-212ENST00000590181 HIBADHP31937 336 aaKnown RBP13.1□□□□□ -0.31
LIG3-212ENST00000590181 HNRNPUQ00839 825 aaKnown RBP eCLIP13.1□□□□□ -0.31
LIG3-212ENST00000590181 SREBF2Q12772 1141 aa13.1□□□□□ -0.31
LIG3-212ENST00000590181 PRAMEF18Q5VWM3 479 aa13.1□□□□□ -0.31
LIG3-212ENST00000590181 FBXO46Q6PJ61 603 aaPredicted RBP13.1□□□□□ -0.31
LIG3-212ENST00000590181 ATF7IPQ6VMQ6 1270 aa13.1□□□□□ -0.31
LIG3-212ENST00000590181 ANKRD44Q8N8A2 993 aa13.1□□□□□ -0.31
LIG3-212ENST00000590181 TBC1D22AQ8WUA7 517 aa13.1□□□□□ -0.31
LIG3-212ENST00000590181 FBXW7Q969H0 707 aa13.1□□□□□ -0.31
LIG3-212ENST00000590181 MRIQ9BWK5 157 aa13.1□□□□□ -0.31
LIG3-212ENST00000590181 ARAP2Q8WZ64 1704 aa13.1□□□□□ -0.31
LIG3-212ENST00000590181 FAM205AQ6ZU69 1335 aa13.1□□□□□ -0.31
LIG3-212ENST00000590181 IRS2Q9Y4H2 1338 aa13.1□□□□□ -0.31
LIG3-212ENST00000590181 COL1A1P02452 1464 aaPredicted RBP13.1□□□□□ -0.31
LIG3-212ENST00000590181 MYO1BO43795 1136 aa13.09□□□□□ -0.31
LIG3-212ENST00000590181 TAF5LO75529 589 aa13.09□□□□□ -0.31
LIG3-212ENST00000590181 IFIT1P09914 478 aaKnown RBP13.09□□□□□ -0.31
LIG3-212ENST00000590181 MS4A1P11836 297 aa13.09□□□□□ -0.31
LIG3-212ENST00000590181 NF2P35240 595 aa13.09□□□□□ -0.31
LIG3-212ENST00000590181 NBPF9Q3BBW0 867 aa13.09□□□□□ -0.31
LIG3-212ENST00000590181 TXNRD3Q86VQ6 643 aa13.09□□□□□ -0.31
LIG3-212ENST00000590181 VPS37DQ86XT2 251 aa13.09□□□□□ -0.31
LIG3-212ENST00000590181 TDRD7Q8NHU6 1098 aaKnown RBP13.09□□□□□ -0.31
LIG3-212ENST00000590181 SUGT1Q9Y2Z0 365 aa13.09□□□□□ -0.31
LIG3-212ENST00000590181 UNCXA6NJT0 531 aa13.08□□□□□ -0.32
LIG3-212ENST00000590181 EYA2O00167 538 aa13.08□□□□□ -0.32
LIG3-212ENST00000590181 FKTNO75072 461 aa13.08□□□□□ -0.32
LIG3-212ENST00000590181 GTF2IP78347 998 aa13.08□□□□□ -0.32
LIG3-212ENST00000590181 PUM3Q15397 648 aaKnown RBP13.08□□□□□ -0.32
LIG3-212ENST00000590181 NOM1Q5C9Z4 860 aaKnown RBP13.08□□□□□ -0.32
LIG3-212ENST00000590181 METTL24Q5JXM2 366 aa13.08□□□□□ -0.32
LIG3-212ENST00000590181 APOBEC3FQ8IUX4 373 aaKnown RBP13.08□□□□□ -0.32
LIG3-212ENST00000590181 HELBQ8NG08 1087 aaPredicted RBP13.08□□□□□ -0.32
LIG3-212ENST00000590181 ZNF594Q96JF6 807 aaPredicted RBP13.08□□□□□ -0.32
LIG3-212ENST00000590181 MXD3Q9BW11 206 aa13.08□□□□□ -0.32
LIG3-212ENST00000590181 PPP2R3BQ9Y5P8 575 aa13.08□□□□□ -0.32
LIG3-212ENST00000590181 SSC5DA1L4H1 1573 aa13.07□□□□□ -0.32
LIG3-212ENST00000590181 PLIN1O60240 522 aa13.07□□□□□ -0.32
LIG3-212ENST00000590181 IL15P40933 162 aaPredicted RBP13.07□□□□□ -0.32
LIG3-212ENST00000590181 TM4SF4P48230 202 aa13.07□□□□□ -0.32
LIG3-212ENST00000590181 HDLBPQ00341 1268 aaKnown RBP13.07□□□□□ -0.32
LIG3-212ENST00000590181 MTX1Q13505 466 aa13.07□□□□□ -0.32
LIG3-212ENST00000590181 ZKSCAN2Q63HK3 967 aa13.07□□□□□ -0.32
LIG3-212ENST00000590181 FBXO33Q7Z6M2 555 aa13.07□□□□□ -0.32
LIG3-212ENST00000590181 LPIN2Q92539 896 aa13.07□□□□□ -0.32
LIG3-212ENST00000590181 GCC1Q96CN9 775 aa13.07□□□□□ -0.32
LIG3-212ENST00000590181 FAM84BQ96KN1 310 aaPredicted RBP13.07□□□□□ -0.32
LIG3-212ENST00000590181 BRCA2P51587 3418 aa13.07□□□□□ -0.32
LIG3-212ENST00000590181 WTIPA6NIX2 430 aaPredicted RBP13.06□□□□□ -0.32
LIG3-212ENST00000590181 WNT10BO00744 389 aa13.06□□□□□ -0.32
LIG3-212ENST00000590181 PTPN12Q05209 780 aaKnown RBP13.06□□□□□ -0.32
LIG3-212ENST00000590181 PRKG1Q13976 671 aa13.06□□□□□ -0.32
LIG3-212ENST00000590181 DLGAP5Q15398 846 aa13.06□□□□□ -0.32
LIG3-212ENST00000590181 VGLL2Q8N8G2 317 aa13.06□□□□□ -0.32
LIG3-212ENST00000590181 ZBED3Q96IU2 234 aaPredicted RBP13.06□□□□□ -0.32
LIG3-212ENST00000590181 CFHR5Q9BXR6 569 aa13.06□□□□□ -0.32
LIG3-212ENST00000590181 COPRSQ9NQ92 184 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms