RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 FOXD4L5Q5VV16 416 aaPredicted RBP12.56□□□□□ -0.4
ZNF540-208ENST00000589857 GAS2L3Q86XJ1 694 aa12.56□□□□□ -0.4
ZNF540-208ENST00000589857 FOXD4L4Q8WXT5 416 aaPredicted RBP12.56□□□□□ -0.4
ZNF540-208ENST00000589857 LLPHQ9BRT6 129 aaKnown RBP12.56□□□□□ -0.4
ZNF540-208ENST00000589857 TSPY26PQ9H489 355 aa12.56□□□□□ -0.4
ZNF540-208ENST00000589857 A0A1B0GUL7 405 aa12.55□□□□□ -0.4
ZNF540-208ENST00000589857 POLRMTO00411 1230 aaKnown RBP12.55□□□□□ -0.4
ZNF540-208ENST00000589857 CSF1RP07333 972 aa12.55□□□□□ -0.4
ZNF540-208ENST00000589857 HSPA1AP0DMV8 641 aaKnown RBP12.55□□□□□ -0.4
ZNF540-208ENST00000589857 HSPA1BP0DMV9 641 aaKnown RBP12.55□□□□□ -0.4
ZNF540-208ENST00000589857 TM4SF1P30408 202 aa12.55□□□□□ -0.4
ZNF540-208ENST00000589857 CHRNA5P30532 468 aa12.55□□□□□ -0.4
ZNF540-208ENST00000589857 KRT85P78386 507 aa12.55□□□□□ -0.4
ZNF540-208ENST00000589857 FGD1P98174 961 aa12.55□□□□□ -0.4
ZNF540-208ENST00000589857 LARP1BQ659C4 914 aaKnown RBP12.55□□□□□ -0.4
ZNF540-208ENST00000589857 DNAJC10Q8IXB1 793 aa12.55□□□□□ -0.4
ZNF540-208ENST00000589857 JARID2Q92833 1246 aaPredicted RBP12.55□□□□□ -0.4
ZNF540-208ENST00000589857 PANK2Q9BZ23 570 aa12.55□□□□□ -0.4
ZNF540-208ENST00000589857 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.55□□□□□ -0.4
ZNF540-208ENST00000589857 ANKRD18BA2A2Z9 1011 aa12.54□□□□□ -0.4
ZNF540-208ENST00000589857 GOLIM4O00461 696 aa12.54□□□□□ -0.4
ZNF540-208ENST00000589857 IL6STP40189 918 aaPredicted RBP12.54□□□□□ -0.4
ZNF540-208ENST00000589857 HMGN5P82970 282 aaKnown RBP12.54□□□□□ -0.4
ZNF540-208ENST00000589857 DDR1Q08345 913 aa12.54□□□□□ -0.4
ZNF540-208ENST00000589857 TTF1Q15361 905 aaPredicted RBP12.54□□□□□ -0.4
ZNF540-208ENST00000589857 ME3Q16798 604 aa12.54□□□□□ -0.4
ZNF540-208ENST00000589857 UVSSAQ2YD98 709 aa12.54□□□□□ -0.4
ZNF540-208ENST00000589857 DDX46Q7L014 1031 aaKnown RBP12.54□□□□□ -0.4
ZNF540-208ENST00000589857 ZNF589Q86UQ0 364 aaPredicted RBP12.54□□□□□ -0.4
ZNF540-208ENST00000589857 USP48Q86UV5 1035 aa12.54□□□□□ -0.4
ZNF540-208ENST00000589857 ZNF512BQ96KM6 892 aaPredicted RBP12.54□□□□□ -0.4
ZNF540-208ENST00000589857 SCAND2PQ9GZW5 306 aaPredicted RBP12.54□□□□□ -0.4
ZNF540-208ENST00000589857 SRP68Q9UHB9 627 aaKnown RBP12.54□□□□□ -0.4
ZNF540-208ENST00000589857 NARFQ9UHQ1 456 aa12.54□□□□□ -0.4
ZNF540-208ENST00000589857 MTMR6Q9Y217 621 aa12.54□□□□□ -0.4
ZNF540-208ENST00000589857 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.54□□□□□ -0.4
ZNF540-208ENST00000589857 VPS37CA5D8V6 355 aaPredicted RBP12.53□□□□□ -0.4
ZNF540-208ENST00000589857 CLCN1P35523 988 aa12.53□□□□□ -0.4
ZNF540-208ENST00000589857 ZSCAN16Q9H4T2 348 aaPredicted RBP12.53□□□□□ -0.4
ZNF540-208ENST00000589857 TMEM63CQ9P1W3 806 aa12.53□□□□□ -0.4
ZNF540-208ENST00000589857 TPCN1Q9ULQ1 816 aa12.53□□□□□ -0.4
ZNF540-208ENST00000589857 ZNF330Q9Y3S2 320 aaPredicted RBP12.53□□□□□ -0.4
ZNF540-208ENST00000589857 ELP1O95163 1332 aa12.53□□□□□ -0.4
ZNF540-208ENST00000589857 TJP1Q07157 1748 aa12.52□□□□□ -0.41
ZNF540-208ENST00000589857 ESPNB1AK53 854 aa12.52□□□□□ -0.41
ZNF540-208ENST00000589857 PDE8AO60658 829 aa12.52□□□□□ -0.41
ZNF540-208ENST00000589857 SERPINB2P05120 415 aa12.52□□□□□ -0.41
ZNF540-208ENST00000589857 UQCRFS1P1P0C7P4 283 aa12.52□□□□□ -0.41
ZNF540-208ENST00000589857 CYP19A1P11511 503 aaPredicted RBP12.52□□□□□ -0.41
ZNF540-208ENST00000589857 PDE6BP35913 854 aa12.52□□□□□ -0.41
ZNF540-208ENST00000589857 CTSWP56202 376 aa12.52□□□□□ -0.41
ZNF540-208ENST00000589857 SOGA3Q5TF21 947 aa12.52□□□□□ -0.41
ZNF540-208ENST00000589857 DHX32Q7L7V1 743 aaKnown RBP12.52□□□□□ -0.41
ZNF540-208ENST00000589857 NLRP10Q86W26 655 aa12.52□□□□□ -0.41
ZNF540-208ENST00000589857 C2CD5Q86YS7 1000 aa12.52□□□□□ -0.41
ZNF540-208ENST00000589857 GTF3C6Q969F1 213 aa12.52□□□□□ -0.41
ZNF540-208ENST00000589857 TNRC6CQ9HCJ0 1690 aaKnown RBP12.51□□□□□ -0.41
ZNF540-208ENST00000589857 ARFGEF1Q9Y6D6 1849 aa12.51□□□□□ -0.41
ZNF540-208ENST00000589857 SYCE3A1L190 88 aa12.51□□□□□ -0.41
ZNF540-208ENST00000589857 NPHP1O15259 732 aa12.51□□□□□ -0.41
ZNF540-208ENST00000589857 LARGE1O95461 756 aa12.51□□□□□ -0.41
ZNF540-208ENST00000589857 CPA1P15085 419 aa12.51□□□□□ -0.41
ZNF540-208ENST00000589857 MCM5P33992 734 aa12.51□□□□□ -0.41
ZNF540-208ENST00000589857 TOB2Q14106 344 aaPredicted RBP12.51□□□□□ -0.41
ZNF540-208ENST00000589857 ATP2B3Q16720 1220 aa12.51□□□□□ -0.41
ZNF540-208ENST00000589857 IMMTQ16891 758 aaKnown RBP12.51□□□□□ -0.41
ZNF540-208ENST00000589857 LRRC24Q50LG9 513 aa12.51□□□□□ -0.41
ZNF540-208ENST00000589857 PARP10Q53GL7 1025 aa12.51□□□□□ -0.41
ZNF540-208ENST00000589857 METTL24Q5JXM2 366 aa12.51□□□□□ -0.41
ZNF540-208ENST00000589857 ATL3Q6DD88 541 aa12.51□□□□□ -0.41
ZNF540-208ENST00000589857 INTS5Q6P9B9 1019 aaKnown RBP12.51□□□□□ -0.41
ZNF540-208ENST00000589857 FBXL16Q8N461 479 aa12.51□□□□□ -0.41
ZNF540-208ENST00000589857 AIDAQ96BJ3 306 aa12.51□□□□□ -0.41
ZNF540-208ENST00000589857 RTN4Q9NQC3 1192 aaKnown RBP12.51□□□□□ -0.41
ZNF540-208ENST00000589857 CREBZFQ9NS37 354 aa12.51□□□□□ -0.41
ZNF540-208ENST00000589857 IQCA1LA6NCM1 817 aa12.5□□□□□ -0.41
ZNF540-208ENST00000589857 GOLGA6L4A6NEF3 574 aa12.5□□□□□ -0.41
ZNF540-208ENST00000589857 H3BQV1 296 aa12.5□□□□□ -0.41
ZNF540-208ENST00000589857 DHX16O60231 1041 aaKnown RBP12.5□□□□□ -0.41
ZNF540-208ENST00000589857 PFKFB2O60825 505 aa12.5□□□□□ -0.41
ZNF540-208ENST00000589857 TIMM10P62072 90 aa12.5□□□□□ -0.41
ZNF540-208ENST00000589857 RASSF7Q02833 373 aa12.5□□□□□ -0.41
ZNF540-208ENST00000589857 NFIXQ14938 502 aa12.5□□□□□ -0.41
ZNF540-208ENST00000589857 ERFEQ4G0M1 354 aa12.5□□□□□ -0.41
ZNF540-208ENST00000589857 Q6ZUG5 572 aa12.5□□□□□ -0.41
ZNF540-208ENST00000589857 RGS22Q8NE09 1264 aa12.5□□□□□ -0.41
ZNF540-208ENST00000589857 APPBP2Q92624 585 aa12.5□□□□□ -0.41
ZNF540-208ENST00000589857 EDC3Q96F86 508 aaKnown RBP12.5□□□□□ -0.41
ZNF540-208ENST00000589857 XAGE2Q96GT9 111 aa12.5□□□□□ -0.41
ZNF540-208ENST00000589857 CNNM1Q9NRU3 951 aa12.5□□□□□ -0.41
ZNF540-208ENST00000589857 RBM27Q9P2N5 1060 aaKnown RBP12.5□□□□□ -0.41
ZNF540-208ENST00000589857 CCDC39Q9UFE4 941 aa12.5□□□□□ -0.41
ZNF540-208ENST00000589857 TRMT112Q9UI30 125 aaKnown RBP12.5□□□□□ -0.41
ZNF540-208ENST00000589857 CNPY2Q9Y2B0 182 aa12.5□□□□□ -0.41
ZNF540-208ENST00000589857 MROH5Q6ZUA9 1318 aa12.5□□□□□ -0.41
ZNF540-208ENST00000589857 WDR19Q8NEZ3 1342 aa12.5□□□□□ -0.41
ZNF540-208ENST00000589857 KIAA1551Q9HCM1 1747 aa12.5□□□□□ -0.41
ZNF540-208ENST00000589857 IRS4O14654 1257 aaPredicted RBP12.49□□□□□ -0.41
ZNF540-208ENST00000589857 RGL2O15211 777 aa12.49□□□□□ -0.41
ZNF540-208ENST00000589857 FIBPO43427 364 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms