RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 TPCN1Q9ULQ1 816 aa8.76□□□□□ -1.01
ZNF540-206ENST00000589117 AKAP2Q9Y2D5 859 aa8.76□□□□□ -1.01
ZNF540-206ENST00000589117 SPTLC1O15269 473 aa8.75□□□□□ -1.01
ZNF540-206ENST00000589117 CIAO1O76071 339 aa8.75□□□□□ -1.01
ZNF540-206ENST00000589117 PTMAP06454 111 aaKnown RBP8.75□□□□□ -1.01
ZNF540-206ENST00000589117 USP17L8P0C7I0 530 aa8.75□□□□□ -1.01
ZNF540-206ENST00000589117 PIP4K2AP48426 406 aaPredicted RBP8.75□□□□□ -1.01
ZNF540-206ENST00000589117 CCDC57Q2TAC2 916 aa8.75□□□□□ -1.01
ZNF540-206ENST00000589117 BRINP3Q76B58 766 aa8.75□□□□□ -1.01
ZNF540-206ENST00000589117 SLAIN2Q9P270 581 aa8.75□□□□□ -1.01
ZNF540-206ENST00000589117 NOL7Q9UMY1 257 aaKnown RBP8.75□□□□□ -1.01
ZNF540-206ENST00000589117 NSFL1CQ9UNZ2 370 aaKnown RBP8.75□□□□□ -1.01
ZNF540-206ENST00000589117 MTMR6Q9Y217 621 aa8.75□□□□□ -1.01
ZNF540-206ENST00000589117 PKD1L3Q7Z443 1732 aa8.75□□□□□ -1.01
ZNF540-206ENST00000589117 FIBPO43427 364 aa8.75□□□□□ -1.01
ZNF540-206ENST00000589117 GADD45BO75293 160 aaPredicted RBP8.75□□□□□ -1.01
ZNF540-206ENST00000589117 CD46P15529 392 aa8.75□□□□□ -1.01
ZNF540-206ENST00000589117 FOSBP53539 338 aa8.75□□□□□ -1.01
ZNF540-206ENST00000589117 CASP7P55210 303 aa8.75□□□□□ -1.01
ZNF540-206ENST00000589117 GORABQ5T7V8 394 aa8.75□□□□□ -1.01
ZNF540-206ENST00000589117 DDX54Q8TDD1 881 aaKnown RBP8.75□□□□□ -1.01
ZNF540-206ENST00000589117 CHAMP1Q96JM3 812 aa8.75□□□□□ -1.01
ZNF540-206ENST00000589117 DBNDD2Q9BQY9 259 aa8.75□□□□□ -1.01
ZNF540-206ENST00000589117 ADAM33Q9BZ11 813 aa8.75□□□□□ -1.01
ZNF540-206ENST00000589117 PAG1Q9NWQ8 432 aa8.75□□□□□ -1.01
ZNF540-206ENST00000589117 CEP126Q9P2H0 1117 aa8.75□□□□□ -1.01
ZNF540-206ENST00000589117 C5P01031 1676 aa8.75□□□□□ -1.01
ZNF540-206ENST00000589117 RCCD1A6NED2 376 aa8.74□□□□□ -1.01
ZNF540-206ENST00000589117 EYA2O00167 538 aa8.74□□□□□ -1.01
ZNF540-206ENST00000589117 STARD3NLO95772 234 aa8.74□□□□□ -1.01
ZNF540-206ENST00000589117 FOXO4P98177 505 aa8.74□□□□□ -1.01
ZNF540-206ENST00000589117 CCDC158Q5M9N0 1113 aa8.74□□□□□ -1.01
ZNF540-206ENST00000589117 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.74□□□□□ -1.01
ZNF540-206ENST00000589117 JARID2Q92833 1246 aaPredicted RBP8.74□□□□□ -1.01
ZNF540-206ENST00000589117 TMOD3Q9NYL9 352 aa8.74□□□□□ -1.01
ZNF540-206ENST00000589117 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.74□□□□□ -1.01
ZNF540-206ENST00000589117 JCADQ9P266 1359 aa8.74□□□□□ -1.01
ZNF540-206ENST00000589117 ELP1O95163 1332 aa8.74□□□□□ -1.01
ZNF540-206ENST00000589117 SH3TC1Q8TE82 1336 aa8.74□□□□□ -1.01
ZNF540-206ENST00000589117 NBPF26B4DH59 902 aa8.74□□□□□ -1.01
ZNF540-206ENST00000589117 LILRB3O75022 631 aa8.74□□□□□ -1.01
ZNF540-206ENST00000589117 LARGE1O95461 756 aa8.74□□□□□ -1.01
ZNF540-206ENST00000589117 HSP90B1P14625 803 aaKnown RBP8.74□□□□□ -1.01
ZNF540-206ENST00000589117 DNM1Q05193 864 aaKnown RBP8.74□□□□□ -1.01
ZNF540-206ENST00000589117 NBPF14Q5TI25 921 aa8.74□□□□□ -1.01
ZNF540-206ENST00000589117 NBPF10Q6P3W6 841 aaKnown RBP8.74□□□□□ -1.01
ZNF540-206ENST00000589117 KIF6Q6ZMV9 814 aa8.74□□□□□ -1.01
ZNF540-206ENST00000589117 ZNF589Q86UQ0 364 aaPredicted RBP8.74□□□□□ -1.01
ZNF540-206ENST00000589117 NBPF15Q8N660 670 aa8.74□□□□□ -1.01
ZNF540-206ENST00000589117 NECAB1Q8N987 351 aa8.74□□□□□ -1.01
ZNF540-206ENST00000589117 RNF214Q8ND24 703 aa8.74□□□□□ -1.01
ZNF540-206ENST00000589117 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.74□□□□□ -1.01
ZNF540-206ENST00000589117 KHSRPQ92945 711 aaKnown RBP eCLIP8.74□□□□□ -1.01
ZNF540-206ENST00000589117 LLPHQ9BRT6 129 aaKnown RBP8.74□□□□□ -1.01
ZNF540-206ENST00000589117 DSCC1Q9BVC3 393 aa8.74□□□□□ -1.01
ZNF540-206ENST00000589117 ZSCAN16Q9H4T2 348 aaPredicted RBP8.74□□□□□ -1.01
ZNF540-206ENST00000589117 SOS2Q07890 1332 aaPredicted RBP8.73□□□□□ -1.01
ZNF540-206ENST00000589117 PARP4Q9UKK3 1724 aaKnown RBP8.73□□□□□ -1.01
ZNF540-206ENST00000589117 H3BQV1 296 aa8.73□□□□□ -1.01
ZNF540-206ENST00000589117 A1BGP04217 495 aa8.73□□□□□ -1.01
ZNF540-206ENST00000589117 ZFYP08048 801 aaPredicted RBP8.73□□□□□ -1.01
ZNF540-206ENST00000589117 IFIT1P09914 478 aaKnown RBP8.73□□□□□ -1.01
ZNF540-206ENST00000589117 CCDC192P0DO97 292 aa8.73□□□□□ -1.01
ZNF540-206ENST00000589117 TRIM28Q13263 835 aaKnown RBP8.73□□□□□ -1.01
ZNF540-206ENST00000589117 TAF7LQ5H9L4 462 aa8.73□□□□□ -1.01
ZNF540-206ENST00000589117 IFFO2Q5TF58 517 aa8.73□□□□□ -1.01
ZNF540-206ENST00000589117 DDX46Q7L014 1031 aaKnown RBP8.73□□□□□ -1.01
ZNF540-206ENST00000589117 ZNF710Q8N1W2 664 aa8.73□□□□□ -1.01
ZNF540-206ENST00000589117 CTNNA3Q9UI47 895 aa8.73□□□□□ -1.01
ZNF540-206ENST00000589117 CFAP45Q9UL16 551 aa8.73□□□□□ -1.01
ZNF540-206ENST00000589117 PALLDQ8WX93 1383 aa8.73□□□□□ -1.01
ZNF540-206ENST00000589117 GOLIM4O00461 696 aa8.72□□□□□ -1.01
ZNF540-206ENST00000589117 HMGN5P82970 282 aaKnown RBP8.72□□□□□ -1.01
ZNF540-206ENST00000589117 TTLL7Q6ZT98 887 aa8.72□□□□□ -1.01
ZNF540-206ENST00000589117 DHX32Q7L7V1 743 aaKnown RBP8.72□□□□□ -1.01
ZNF540-206ENST00000589117 PBXIP1Q96AQ6 731 aa8.72□□□□□ -1.01
ZNF540-206ENST00000589117 ZBTB3Q9H5J0 574 aa8.72□□□□□ -1.01
ZNF540-206ENST00000589117 AFDNP55196 1824 aaKnown RBP8.72□□□□□ -1.01
ZNF540-206ENST00000589117 ZNF500O60304 480 aaPredicted RBP8.72□□□□□ -1.01
ZNF540-206ENST00000589117 TCIRG1Q13488 830 aa8.72□□□□□ -1.01
ZNF540-206ENST00000589117 TOB2Q14106 344 aaPredicted RBP8.72□□□□□ -1.01
ZNF540-206ENST00000589117 HSP90AB3PQ58FF7 597 aa8.72□□□□□ -1.01
ZNF540-206ENST00000589117 ATG9AQ7Z3C6 839 aa8.72□□□□□ -1.01
ZNF540-206ENST00000589117 ZNF454Q8N9F8 522 aa8.72□□□□□ -1.01
ZNF540-206ENST00000589117 EDC3Q96F86 508 aaKnown RBP8.72□□□□□ -1.01
ZNF540-206ENST00000589117 SPATA32Q96LK8 384 aa8.72□□□□□ -1.01
ZNF540-206ENST00000589117 STRN4Q9NRL3 753 aa8.72□□□□□ -1.01
ZNF540-206ENST00000589117 ZKSCAN5Q9Y2L8 839 aa8.72□□□□□ -1.01
ZNF540-206ENST00000589117 LAMB4A4D0S4 1761 aa8.72□□□□□ -1.01
ZNF540-206ENST00000589117 RNF113AO15541 343 aaKnown RBP8.71□□□□□ -1.01
ZNF540-206ENST00000589117 PRSS12P56730 875 aa8.71□□□□□ -1.01
ZNF540-206ENST00000589117 TIMM10P62072 90 aa8.71□□□□□ -1.01
ZNF540-206ENST00000589117 KIAA2012Q0VF49 1180 aa8.71□□□□□ -1.01
ZNF540-206ENST00000589117 Q6ZUG5 572 aa8.71□□□□□ -1.01
ZNF540-206ENST00000589117 HLA-CQ95604 372 aa8.71□□□□□ -1.01
ZNF540-206ENST00000589117 GTF3C6Q969F1 213 aa8.71□□□□□ -1.01
ZNF540-206ENST00000589117 ARFGEF2Q9Y6D5 1785 aa8.71□□□□□ -1.01
ZNF540-206ENST00000589117 A0A1B0GUL7 405 aa8.71□□□□□ -1.02
ZNF540-206ENST00000589117 TPM3P06753 285 aa8.71□□□□□ -1.02
ZNF540-206ENST00000589117 TPM2P07951 284 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms