RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 HIBADHP31937 336 aaKnown RBP35.14■■■■□ 3.22
LIG3-208ENST00000586407 CDCA5Q96FF9 252 aa35.14■■■■□ 3.22
LIG3-208ENST00000586407 PCDHAC2Q9Y5I4 1007 aa35.14■■■■□ 3.22
LIG3-208ENST00000586407 PCNTO95613 3336 aa35.13■■■■□ 3.21
LIG3-208ENST00000586407 TDRD7Q8NHU6 1098 aaKnown RBP35.13■■■■□ 3.21
LIG3-208ENST00000586407 THSD7BQ9C0I4 1608 aa35.13■■■■□ 3.21
LIG3-208ENST00000586407 ARAP2Q8WZ64 1704 aa35.12■■■■□ 3.21
LIG3-208ENST00000586407 ATG9AQ7Z3C6 839 aa35.12■■■■□ 3.21
LIG3-208ENST00000586407 HDAC9Q9UKV0 1011 aa35.12■■■■□ 3.21
LIG3-208ENST00000586407 PA2G4Q9UQ80 394 aaKnown RBP35.12■■■■□ 3.21
LIG3-208ENST00000586407 GBA2Q9HCG7 927 aaPredicted RBP35.11■■■■□ 3.21
LIG3-208ENST00000586407 PRAMEF18Q5VWM3 479 aa35.1■■■■□ 3.21
LIG3-208ENST00000586407 ZKSCAN2Q63HK3 967 aa35.1■■■■□ 3.21
LIG3-208ENST00000586407 FAM205AQ6ZU69 1335 aa35.09■■■■□ 3.21
LIG3-208ENST00000586407 AOC2O75106 756 aa35.09■■■■□ 3.21
LIG3-208ENST00000586407 FBXO33Q7Z6M2 555 aa35.09■■■■□ 3.21
LIG3-208ENST00000586407 TMEM57Q8N5G2 664 aa35.09■■■■□ 3.21
LIG3-208ENST00000586407 ECM29Q5VYK3 1845 aa35.09■■■■□ 3.21
LIG3-208ENST00000586407 PITPNM2Q9BZ72 1349 aa35.08■■■■□ 3.21
LIG3-208ENST00000586407 HUNKP57058 714 aa35.08■■■■□ 3.21
LIG3-208ENST00000586407 ZBED3Q96IU2 234 aaPredicted RBP35.08■■■■□ 3.21
LIG3-208ENST00000586407 MYH13Q9UKX3 1938 aa35.07■■■■□ 3.2
LIG3-208ENST00000586407 FOXN1O15353 648 aa35.07■■■■□ 3.2
LIG3-208ENST00000586407 GNAI3P08754 354 aa35.07■■■■□ 3.2
LIG3-208ENST00000586407 FGFR2P21802 821 aa35.07■■■■□ 3.2
LIG3-208ENST00000586407 ECE1P42892 770 aa35.07■■■■□ 3.2
LIG3-208ENST00000586407 BCAMP50895 628 aa35.07■■■■□ 3.2
LIG3-208ENST00000586407 PUM3Q15397 648 aaKnown RBP35.07■■■■□ 3.2
LIG3-208ENST00000586407 VPS37DQ86XT2 251 aa35.07■■■■□ 3.2
LIG3-208ENST00000586407 CHAF1AQ13111 956 aaPredicted RBP35.06■■■■□ 3.2
LIG3-208ENST00000586407 MFSD14BQ5SR56 506 aa35.06■■■■□ 3.2
LIG3-208ENST00000586407 HDAC5Q9UQL6 1122 aa35.06■■■■□ 3.2
LIG3-208ENST00000586407 AOX1Q06278 1338 aa35.06■■■■□ 3.2
LIG3-208ENST00000586407 FKBP1AP62942 108 aaKnown RBP35.05■■■■□ 3.2
LIG3-208ENST00000586407 DLGAP5Q15398 846 aa35.05■■■■□ 3.2
LIG3-208ENST00000586407 COL13A1Q5TAT6 717 aaPredicted RBP35.05■■■■□ 3.2
LIG3-208ENST00000586407 C2orf69Q8N8R5 385 aa35.05■■■■□ 3.2
LIG3-208ENST00000586407 GRIK5Q16478 980 aa35.04■■■■□ 3.2
LIG3-208ENST00000586407 CFAP100Q494V2 611 aa35.04■■■■□ 3.2
LIG3-208ENST00000586407 CAVIN4Q5BKX8 364 aa35.04■■■■□ 3.2
LIG3-208ENST00000586407 IFIT1P09914 478 aaKnown RBP35.03■■■■□ 3.2
LIG3-208ENST00000586407 WBP1LQ9NX94 342 aa35.03■■■■□ 3.2
LIG3-208ENST00000586407 CIAO1O76071 339 aa35.02■■■■□ 3.2
LIG3-208ENST00000586407 HHIPL1Q96JK4 782 aa35.02■■■■□ 3.2
LIG3-208ENST00000586407 SRGAP3O43295 1099 aa35.01■■■■□ 3.2
LIG3-208ENST00000586407 SLC5A1P13866 664 aa35.01■■■■□ 3.2
LIG3-208ENST00000586407 MMP14P50281 582 aa35.01■■■■□ 3.2
LIG3-208ENST00000586407 MOB2Q70IA6 237 aa35.01■■■■□ 3.2
LIG3-208ENST00000586407 COPRSQ9NQ92 184 aa35.01■■■■□ 3.2
LIG3-208ENST00000586407 PAPPA2Q9BXP8 1791 aa35■■■■□ 3.19
LIG3-208ENST00000586407 FRAT2O75474 233 aaPredicted RBP35■■■■□ 3.19
LIG3-208ENST00000586407 RLBP1P12271 317 aa35■■■■□ 3.19
LIG3-208ENST00000586407 AIDAQ96BJ3 306 aa35■■■■□ 3.19
LIG3-208ENST00000586407 ZIC5Q96T25 663 aa35■■■■□ 3.19
LIG3-208ENST00000586407 TTF2Q9UNY4 1162 aaKnown RBP35■■■■□ 3.19
LIG3-208ENST00000586407 CLRN2A0PK11 232 aa34.99■■■■□ 3.19
LIG3-208ENST00000586407 RBM5P52756 815 aaKnown RBP eCLIP34.99■■■■□ 3.19
LIG3-208ENST00000586407 ATP2B3Q16720 1220 aa34.99■■■■□ 3.19
LIG3-208ENST00000586407 LPIN2Q92539 896 aa34.99■■■■□ 3.19
LIG3-208ENST00000586407 PRMT6Q96LA8 375 aaPredicted RBP34.99■■■■□ 3.19
LIG3-208ENST00000586407 CEP126Q9P2H0 1117 aa34.99■■■■□ 3.19
LIG3-208ENST00000586407 FBXO3Q9UK99 471 aa34.99■■■■□ 3.19
LIG3-208ENST00000586407 GNAI2P04899 355 aa34.98■■■■□ 3.19
LIG3-208ENST00000586407 MTMR14Q8NCE2 650 aa34.98■■■■□ 3.19
LIG3-208ENST00000586407 SPDYE2BA6NHP3 402 aa34.97■■■■□ 3.19
LIG3-208ENST00000586407 SPDYE6P0CI01 402 aa34.97■■■■□ 3.19
LIG3-208ENST00000586407 IL15P40933 162 aaPredicted RBP34.97■■■■□ 3.19
LIG3-208ENST00000586407 MTX1Q13505 466 aa34.97■■■■□ 3.19
LIG3-208ENST00000586407 RGMBQ6NW40 437 aa34.97■■■■□ 3.19
LIG3-208ENST00000586407 APOBEC3FQ8IUX4 373 aaKnown RBP34.97■■■■□ 3.19
LIG3-208ENST00000586407 COL1A1P02452 1464 aaPredicted RBP34.97■■■■□ 3.19
LIG3-208ENST00000586407 MAP2K1Q02750 393 aaPredicted RBP34.96■■■■□ 3.19
LIG3-208ENST00000586407 FTSJ3Q8IY81 847 aaKnown RBP34.96■■■■□ 3.19
LIG3-208ENST00000586407 PNMA6EA0A0J9YXQ4 647 aa34.95■■■■□ 3.19
LIG3-208ENST00000586407 DZIP1LQ8IYY4 767 aaKnown RBP34.95■■■■□ 3.19
LIG3-208ENST00000586407 C1orf115Q9H7X2 142 aa34.95■■■■□ 3.19
LIG3-208ENST00000586407 VEZTQ9HBM0 779 aa34.94■■■■□ 3.18
LIG3-208ENST00000586407 FAM155AB1AL88 458 aaPredicted RBP34.93■■■■□ 3.18
LIG3-208ENST00000586407 ADORA1P30542 326 aa34.93■■■■□ 3.18
LIG3-208ENST00000586407 ZNF157P51786 506 aaPredicted RBP34.93■■■■□ 3.18
LIG3-208ENST00000586407 ITPRIPQ8IWB1 547 aa34.93■■■■□ 3.18
LIG3-208ENST00000586407 MAP2K2P36507 400 aa34.92■■■■□ 3.18
LIG3-208ENST00000586407 PRKG1Q13976 671 aa34.92■■■■□ 3.18
LIG3-208ENST00000586407 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP34.92■■■■□ 3.18
LIG3-208ENST00000586407 UBE2Q2LH0YL09 131 aa34.91■■■■□ 3.18
LIG3-208ENST00000586407 CTCFP49711 727 aaPredicted RBP34.91■■■■□ 3.18
LIG3-208ENST00000586407 TTLL12Q14166 644 aaPredicted RBP34.91■■■■□ 3.18
LIG3-208ENST00000586407 FZD1Q9UP38 647 aa34.91■■■■□ 3.18
LIG3-208ENST00000586407 CRKP46108 304 aa34.9■■■■□ 3.18
LIG3-208ENST00000586407 LBX1P52954 281 aa34.9■■■■□ 3.18
LIG3-208ENST00000586407 TFCP2Q12800 502 aa34.9■■■■□ 3.18
LIG3-208ENST00000586407 TBC1D22AQ8WUA7 517 aa34.9■■■■□ 3.18
LIG3-208ENST00000586407 DEFB129Q9H1M3 183 aa34.9■■■■□ 3.18
LIG3-208ENST00000586407 TSKSQ9UJT2 592 aa34.9■■■■□ 3.18
LIG3-208ENST00000586407 SERPINA10Q9UK55 444 aa34.9■■■■□ 3.18
LIG3-208ENST00000586407 MYO1BO43795 1136 aa34.89■■■■□ 3.18
LIG3-208ENST00000586407 HSPA8P11142 646 aaKnown RBP34.89■■■■□ 3.18
LIG3-208ENST00000586407 PHKA1P46020 1223 aa34.89■■■■□ 3.18
LIG3-208ENST00000586407 PANK1Q8TE04 598 aa34.89■■■■□ 3.18
LIG3-208ENST00000586407 TDRD3Q9H7E2 651 aaKnown RBP34.89■■■■□ 3.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms