RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 ANGEL2Q5VTE6 544 aaKnown RBP18.5■□□□□ 0.55
SS18-212ENST00000579061 CERS5Q8N5B7 392 aa18.5■□□□□ 0.55
SS18-212ENST00000579061 HHIPL1Q96JK4 782 aa18.5■□□□□ 0.55
SS18-212ENST00000579061 ASTN2O75129 1339 aaPredicted RBP18.49■□□□□ 0.55
SS18-212ENST00000579061 ARAP2Q8WZ64 1704 aa18.49■□□□□ 0.55
SS18-212ENST00000579061 ECM29Q5VYK3 1845 aa18.49■□□□□ 0.55
SS18-212ENST00000579061 WNT10BO00744 389 aa18.49■□□□□ 0.55
SS18-212ENST00000579061 GNAI2P04899 355 aa18.49■□□□□ 0.55
SS18-212ENST00000579061 SAPCD2Q86UD0 394 aa18.49■□□□□ 0.55
SS18-212ENST00000579061 VPS37DQ86XT2 251 aa18.49■□□□□ 0.55
SS18-212ENST00000579061 TMEM57Q8N5G2 664 aa18.49■□□□□ 0.55
SS18-212ENST00000579061 MTMR14Q8NCE2 650 aa18.49■□□□□ 0.55
SS18-212ENST00000579061 ZBED3Q96IU2 234 aaPredicted RBP18.49■□□□□ 0.55
SS18-212ENST00000579061 ADM5C9JUS6 153 aa18.48■□□□□ 0.55
SS18-212ENST00000579061 IL15P40933 162 aaPredicted RBP18.48■□□□□ 0.55
SS18-212ENST00000579061 ECE1P42892 770 aa18.48■□□□□ 0.55
SS18-212ENST00000579061 NBPF9Q3BBW0 867 aa18.48■□□□□ 0.55
SS18-212ENST00000579061 DZIP1LQ8IYY4 767 aaKnown RBP18.48■□□□□ 0.55
SS18-212ENST00000579061 LPIN2Q92539 896 aa18.48■□□□□ 0.55
SS18-212ENST00000579061 CEP126Q9P2H0 1117 aa18.48■□□□□ 0.55
SS18-212ENST00000579061 MYH13Q9UKX3 1938 aa18.47■□□□□ 0.55
SS18-212ENST00000579061 SLC5A1P13866 664 aa18.47■□□□□ 0.55
SS18-212ENST00000579061 FTSJ3Q8IY81 847 aaKnown RBP18.47■□□□□ 0.55
SS18-212ENST00000579061 SIL1Q9H173 461 aa18.47■□□□□ 0.55
SS18-212ENST00000579061 ZNF408Q9H9D4 720 aa18.47■□□□□ 0.55
SS18-212ENST00000579061 WDR33Q9C0J8 1336 aaKnown RBP18.47■□□□□ 0.55
SS18-212ENST00000579061 SRGAP3O43295 1099 aa18.46■□□□□ 0.55
SS18-212ENST00000579061 DLGAP5Q15398 846 aa18.46■□□□□ 0.55
SS18-212ENST00000579061 MFSD14BQ5SR56 506 aa18.46■□□□□ 0.55
SS18-212ENST00000579061 GBA2Q9HCG7 927 aaPredicted RBP18.46■□□□□ 0.55
SS18-212ENST00000579061 PA2G4Q9UQ80 394 aaKnown RBP18.46■□□□□ 0.55
SS18-212ENST00000579061 THSD7BQ9C0I4 1608 aa18.45■□□□□ 0.54
SS18-212ENST00000579061 BCAMP50895 628 aa18.45■□□□□ 0.54
SS18-212ENST00000579061 DLK2Q6UY11 383 aa18.45■□□□□ 0.54
SS18-212ENST00000579061 C2orf69Q8N8R5 385 aa18.45■□□□□ 0.54
SS18-212ENST00000579061 TBC1D22AQ8WUA7 517 aa18.45■□□□□ 0.54
SS18-212ENST00000579061 CDCA5Q96FF9 252 aa18.45■□□□□ 0.54
SS18-212ENST00000579061 CAPNS2Q96L46 248 aa18.45■□□□□ 0.54
SS18-212ENST00000579061 FRAT2O75474 233 aaPredicted RBP18.44■□□□□ 0.54
SS18-212ENST00000579061 HSPA1AP0DMV8 641 aaKnown RBP18.44■□□□□ 0.54
SS18-212ENST00000579061 HSPA1BP0DMV9 641 aaKnown RBP18.44■□□□□ 0.54
SS18-212ENST00000579061 MS4A1P11836 297 aa18.44■□□□□ 0.54
SS18-212ENST00000579061 ATP2B3Q16720 1220 aa18.44■□□□□ 0.54
SS18-212ENST00000579061 APOBEC3FQ8IUX4 373 aaKnown RBP18.44■□□□□ 0.54
SS18-212ENST00000579061 JAG2Q9Y219 1238 aa18.44■□□□□ 0.54
SS18-212ENST00000579061 F8W031 263 aaPredicted RBP18.43■□□□□ 0.54
SS18-212ENST00000579061 ZBTB22O15209 634 aa18.43■□□□□ 0.54
SS18-212ENST00000579061 FKBP1BP68106 108 aa18.43■□□□□ 0.54
SS18-212ENST00000579061 CFAP100Q494V2 611 aa18.43■□□□□ 0.54
SS18-212ENST00000579061 COL1A1P02452 1464 aaPredicted RBP18.42■□□□□ 0.54
SS18-212ENST00000579061 SPDYE2BA6NHP3 402 aa18.42■□□□□ 0.54
SS18-212ENST00000579061 ZBTB7BO15156 539 aaPredicted RBP18.42■□□□□ 0.54
SS18-212ENST00000579061 SPDYE6P0CI01 402 aa18.42■□□□□ 0.54
SS18-212ENST00000579061 RLBP1P12271 317 aa18.42■□□□□ 0.54
SS18-212ENST00000579061 HUNKP57058 714 aa18.42■□□□□ 0.54
SS18-212ENST00000579061 CYP4F22Q6NT55 531 aa18.42■□□□□ 0.54
SS18-212ENST00000579061 PAXIP1Q6ZW49 1069 aaPredicted RBP18.42■□□□□ 0.54
SS18-212ENST00000579061 ITPRIPQ8IWB1 547 aa18.42■□□□□ 0.54
SS18-212ENST00000579061 SERPINA10Q9UK55 444 aa18.42■□□□□ 0.54
SS18-212ENST00000579061 TTF2Q9UNY4 1162 aaKnown RBP18.42■□□□□ 0.54
SS18-212ENST00000579061 IQSEC3Q9UPP2 1182 aaPredicted RBP18.42■□□□□ 0.54
SS18-212ENST00000579061 SUGT1Q9Y2Z0 365 aa18.42■□□□□ 0.54
SS18-212ENST00000579061 PAPPA2Q9BXP8 1791 aa18.42■□□□□ 0.54
SS18-212ENST00000579061 MYO1BO43795 1136 aa18.41■□□□□ 0.54
SS18-212ENST00000579061 MAP2K2P36507 400 aa18.41■□□□□ 0.54
SS18-212ENST00000579061 HDLBPQ00341 1268 aaKnown RBP18.41■□□□□ 0.54
SS18-212ENST00000579061 MAP2K1Q02750 393 aaPredicted RBP18.41■□□□□ 0.54
SS18-212ENST00000579061 GNL3LQ9NVN8 582 aaKnown RBP18.41■□□□□ 0.54
SS18-212ENST00000579061 AKAP2Q9Y2D5 859 aa18.41■□□□□ 0.54
SS18-212ENST00000579061 PNMA6EA0A0J9YXQ4 647 aa18.4■□□□□ 0.54
SS18-212ENST00000579061 ATP8B2P98198 1209 aa18.4■□□□□ 0.54
SS18-212ENST00000579061 CHAF1AQ13111 956 aaPredicted RBP18.4■□□□□ 0.54
SS18-212ENST00000579061 POLA2Q14181 598 aa18.4■□□□□ 0.54
SS18-212ENST00000579061 WDR66Q8TBY9 1149 aa18.4■□□□□ 0.54
SS18-212ENST00000579061 PRMT6Q96LA8 375 aaPredicted RBP18.4■□□□□ 0.54
SS18-212ENST00000579061 MRIQ9BWK5 157 aa18.4■□□□□ 0.54
SS18-212ENST00000579061 WBP1LQ9NX94 342 aa18.4■□□□□ 0.54
SS18-212ENST00000579061 SEMA3EO15041 775 aa18.39■□□□□ 0.53
SS18-212ENST00000579061 NF2P35240 595 aa18.39■□□□□ 0.53
SS18-212ENST00000579061 RBM5P52756 815 aaKnown RBP eCLIP18.39■□□□□ 0.53
SS18-212ENST00000579061 RGMBQ6NW40 437 aa18.39■□□□□ 0.53
SS18-212ENST00000579061 SSH3Q8TE77 659 aa18.39■□□□□ 0.53
SS18-212ENST00000579061 RCAN3Q9UKA8 241 aa18.39■□□□□ 0.53
SS18-212ENST00000579061 PPP2R3BQ9Y5P8 575 aa18.39■□□□□ 0.53
SS18-212ENST00000579061 G3BP1Q13283 466 aaKnown RBP eCLIP18.38■□□□□ 0.53
SS18-212ENST00000579061 CCDC102AQ96A19 550 aa18.38■□□□□ 0.53
SS18-212ENST00000579061 AIDAQ96BJ3 306 aa18.38■□□□□ 0.53
SS18-212ENST00000579061 SCAF8Q9UPN6 1271 aaKnown RBP18.38■□□□□ 0.53
SS18-212ENST00000579061 PCDHAC2Q9Y5I4 1007 aa18.38■□□□□ 0.53
SS18-212ENST00000579061 MAST3O60307 1309 aa18.38■□□□□ 0.53
SS18-212ENST00000579061 CRKP46108 304 aa18.37■□□□□ 0.53
SS18-212ENST00000579061 TFCP2Q12800 502 aa18.37■□□□□ 0.53
SS18-212ENST00000579061 NOGQ13253 232 aa18.37■□□□□ 0.53
SS18-212ENST00000579061 PANK1Q8TE04 598 aa18.37■□□□□ 0.53
SS18-212ENST00000579061 DEFB129Q9H1M3 183 aa18.37■□□□□ 0.53
SS18-212ENST00000579061 DENND2AQ9ULE3 1009 aa18.37■□□□□ 0.53
SS18-212ENST00000579061 A0A1B0GUL7 405 aa18.36■□□□□ 0.53
SS18-212ENST00000579061 PHKA1P46020 1223 aa18.36■□□□□ 0.53
SS18-212ENST00000579061 TIMM10P62072 90 aa18.36■□□□□ 0.53
SS18-212ENST00000579061 GRM1Q13255 1194 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms