RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 TNIP1Q15025 636 aa22.27■■□□□ 1.16
CCDC40-213ENST00000574933 USP17L1Q7RTZ2 530 aa22.27■■□□□ 1.16
CCDC40-213ENST00000574933 WDR90Q96KV7 1748 aa22.27■■□□□ 1.16
CCDC40-213ENST00000574933 DENND2AQ9ULE3 1009 aa22.27■■□□□ 1.16
CCDC40-213ENST00000574933 DOCK2Q92608 1830 aa22.27■■□□□ 1.15
CCDC40-213ENST00000574933 DACT2Q5SW24 774 aa22.26■■□□□ 1.15
CCDC40-213ENST00000574933 TTLL5Q6EMB2 1281 aa22.26■■□□□ 1.15
CCDC40-213ENST00000574933 GPC2Q8N158 579 aa22.26■■□□□ 1.15
CCDC40-213ENST00000574933 LNPKQ9C0E8 428 aa22.26■■□□□ 1.15
CCDC40-213ENST00000574933 MYH7P12883 1935 aa22.25■■□□□ 1.15
CCDC40-213ENST00000574933 PSMD14O00487 310 aa22.25■■□□□ 1.15
CCDC40-213ENST00000574933 RAD17O75943 681 aa22.25■■□□□ 1.15
CCDC40-213ENST00000574933 RASGRF1Q13972 1273 aa22.25■■□□□ 1.15
CCDC40-213ENST00000574933 TTC39AQ5SRH9 613 aa22.25■■□□□ 1.15
CCDC40-213ENST00000574933 C16orf71Q8IYS4 520 aaPredicted RBP22.25■■□□□ 1.15
CCDC40-213ENST00000574933 STAP2Q9UGK3 403 aa22.25■■□□□ 1.15
CCDC40-213ENST00000574933 IQSEC3Q9UPP2 1182 aaPredicted RBP22.25■■□□□ 1.15
CCDC40-213ENST00000574933 TTC41PQ6P2S7 1318 aa22.25■■□□□ 1.15
CCDC40-213ENST00000574933 GLTPD2A6NH11 291 aa22.24■■□□□ 1.15
CCDC40-213ENST00000574933 ATP5JP18859 108 aa22.24■■□□□ 1.15
CCDC40-213ENST00000574933 MCAMP43121 646 aa22.24■■□□□ 1.15
CCDC40-213ENST00000574933 GTF2IP78347 998 aa22.24■■□□□ 1.15
CCDC40-213ENST00000574933 DPY19L2Q6NUT2 758 aa22.24■■□□□ 1.15
CCDC40-213ENST00000574933 ECHDC1Q9NTX5 307 aa22.24■■□□□ 1.15
CCDC40-213ENST00000574933 HMG20BQ9P0W2 317 aa22.24■■□□□ 1.15
CCDC40-213ENST00000574933 SALL1Q9NSC2 1324 aa22.24■■□□□ 1.15
CCDC40-213ENST00000574933 FRAT2O75474 233 aaPredicted RBP22.23■■□□□ 1.15
CCDC40-213ENST00000574933 SCARF1Q14162 830 aa22.23■■□□□ 1.15
CCDC40-213ENST00000574933 RSBN1LQ6PCB5 846 aaPredicted RBP22.23■■□□□ 1.15
CCDC40-213ENST00000574933 WDR66Q8TBY9 1149 aa22.23■■□□□ 1.15
CCDC40-213ENST00000574933 OTUD7AQ8TE49 926 aaPredicted RBP22.23■■□□□ 1.15
CCDC40-213ENST00000574933 TBC1D22AQ8WUA7 517 aa22.23■■□□□ 1.15
CCDC40-213ENST00000574933 GMLQ99445 158 aa22.23■■□□□ 1.15
CCDC40-213ENST00000574933 MYO3BQ8WXR4 1341 aa22.23■■□□□ 1.15
CCDC40-213ENST00000574933 AK9Q5TCS8 1911 aa22.22■■□□□ 1.15
CCDC40-213ENST00000574933 MX1P20591 662 aa22.22■■□□□ 1.15
CCDC40-213ENST00000574933 RPS12P25398 132 aaKnown RBP22.22■■□□□ 1.15
CCDC40-213ENST00000574933 SPATA5Q8NB90 893 aa22.22■■□□□ 1.15
CCDC40-213ENST00000574933 AGBL3Q8NEM8 1001 aa22.22■■□□□ 1.15
CCDC40-213ENST00000574933 GPATCH3Q96I76 525 aa22.22■■□□□ 1.15
CCDC40-213ENST00000574933 L3MBTL3Q96JM7 780 aaPredicted RBP22.22■■□□□ 1.15
CCDC40-213ENST00000574933 MYH2Q9UKX2 1941 aa22.21■■□□□ 1.15
CCDC40-213ENST00000574933 DPF2Q92785 391 aa22.21■■□□□ 1.15
CCDC40-213ENST00000574933 OSBPL3Q9H4L5 887 aa22.21■■□□□ 1.15
CCDC40-213ENST00000574933 SUGT1Q9Y2Z0 365 aa22.21■■□□□ 1.15
CCDC40-213ENST00000574933 AOX1Q06278 1338 aa22.21■■□□□ 1.15
CCDC40-213ENST00000574933 DDNO94850 711 aaPredicted RBP22.2■■□□□ 1.14
CCDC40-213ENST00000574933 MMP14P50281 582 aa22.2■■□□□ 1.14
CCDC40-213ENST00000574933 PDE1AP54750 535 aa22.2■■□□□ 1.14
CCDC40-213ENST00000574933 PLEKHM2Q8IWE5 1019 aa22.2■■□□□ 1.14
CCDC40-213ENST00000574933 CERS5Q8N5B7 392 aa22.2■■□□□ 1.14
CCDC40-213ENST00000574933 BCL11AQ9H165 835 aa22.2■■□□□ 1.14
CCDC40-213ENST00000574933 MAST2Q6P0Q8 1798 aa22.2■■□□□ 1.14
CCDC40-213ENST00000574933 IGSF3O75054 1194 aa22.19■■□□□ 1.14
CCDC40-213ENST00000574933 PDE4AP27815 886 aa22.19■■□□□ 1.14
CCDC40-213ENST00000574933 CHAF1AQ13111 956 aaPredicted RBP22.19■■□□□ 1.14
CCDC40-213ENST00000574933 MFSD14BQ5SR56 506 aa22.19■■□□□ 1.14
CCDC40-213ENST00000574933 ZGPATQ8N5A5 531 aaKnown RBP22.19■■□□□ 1.14
CCDC40-213ENST00000574933 PI4K2BQ8TCG2 481 aa22.19■■□□□ 1.14
CCDC40-213ENST00000574933 ECM29Q5VYK3 1845 aa22.18■■□□□ 1.14
CCDC40-213ENST00000574933 ERC2O15083 957 aa22.18■■□□□ 1.14
CCDC40-213ENST00000574933 PI16Q6UXB8 463 aa22.18■■□□□ 1.14
CCDC40-213ENST00000574933 HAUS7Q99871 368 aa22.18■■□□□ 1.14
CCDC40-213ENST00000574933 GJA3Q9Y6H8 435 aa22.18■■□□□ 1.14
CCDC40-213ENST00000574933 GLRX3O76003 335 aaKnown RBP22.17■■□□□ 1.14
CCDC40-213ENST00000574933 ZAP70P43403 619 aa22.17■■□□□ 1.14
CCDC40-213ENST00000574933 GMPSP49915 693 aaPredicted RBP22.17■■□□□ 1.14
CCDC40-213ENST00000574933 FBXW7Q969H0 707 aa22.17■■□□□ 1.14
CCDC40-213ENST00000574933 MXD3Q9BW11 206 aa22.17■■□□□ 1.14
CCDC40-213ENST00000574933 JAG2Q9Y219 1238 aa22.17■■□□□ 1.14
CCDC40-213ENST00000574933 ZBTB12Q9Y330 459 aaPredicted RBP22.17■■□□□ 1.14
CCDC40-213ENST00000574933 CYP2E1P05181 493 aaPredicted RBP22.16■■□□□ 1.14
CCDC40-213ENST00000574933 SCNN1DP51172 638 aa22.16■■□□□ 1.14
CCDC40-213ENST00000574933 BOLA2Q9H3K6 86 aa22.16■■□□□ 1.14
CCDC40-213ENST00000574933 SNRKQ9NRH2 765 aa22.16■■□□□ 1.14
CCDC40-213ENST00000574933 MRIQ9BWK5 157 aa22.15■■□□□ 1.14
CCDC40-213ENST00000574933 GPRC5DQ9NZD1 345 aa22.15■■□□□ 1.14
CCDC40-213ENST00000574933 POLR2AP24928 1970 aaKnown RBP22.14■■□□□ 1.14
CCDC40-213ENST00000574933 POTECB2RU33 542 aa22.14■■□□□ 1.13
CCDC40-213ENST00000574933 ZNF280AP59817 542 aaPredicted RBP22.14■■□□□ 1.13
CCDC40-213ENST00000574933 TSHZ3Q63HK5 1081 aa22.14■■□□□ 1.13
CCDC40-213ENST00000574933 SPTY2D1Q68D10 685 aaPredicted RBP22.14■■□□□ 1.13
CCDC40-213ENST00000574933 MAST3O60307 1309 aa22.13■■□□□ 1.13
CCDC40-213ENST00000574933 ADAMTSL1Q8N6G6 1762 aa22.13■■□□□ 1.13
CCDC40-213ENST00000574933 USP17L8P0C7I0 530 aa22.13■■□□□ 1.13
CCDC40-213ENST00000574933 HDLBPQ00341 1268 aaKnown RBP22.13■■□□□ 1.13
CCDC40-213ENST00000574933 TTF1Q15361 905 aaPredicted RBP22.13■■□□□ 1.13
CCDC40-213ENST00000574933 GRIK5Q16478 980 aa22.13■■□□□ 1.13
CCDC40-213ENST00000574933 CNOT7Q9UIV1 285 aaKnown RBP22.13■■□□□ 1.13
CCDC40-213ENST00000574933 LDHBP07195 334 aaKnown RBP22.12■■□□□ 1.13
CCDC40-213ENST00000574933 PRDX5P30044 214 aa22.12■■□□□ 1.13
CCDC40-213ENST00000574933 TMED8Q6PL24 325 aaPredicted RBP22.12■■□□□ 1.13
CCDC40-213ENST00000574933 TBC1D9Q6ZT07 1266 aa22.12■■□□□ 1.13
CCDC40-213ENST00000574933 KIAA0825Q8IV33 1275 aa22.12■■□□□ 1.13
CCDC40-213ENST00000574933 PIH1D3Q9NQM4 214 aaKnown RBP22.12■■□□□ 1.13
CCDC40-213ENST00000574933 PAG1Q9NWQ8 432 aa22.12■■□□□ 1.13
CCDC40-213ENST00000574933 NDUFB9Q9Y6M9 179 aa22.12■■□□□ 1.13
CCDC40-213ENST00000574933 IQCA1LA6NCM1 817 aa22.11■■□□□ 1.13
CCDC40-213ENST00000574933 ERICH6Q7L0X2 663 aa22.11■■□□□ 1.13
CCDC40-213ENST00000574933 MICALL2Q8IY33 904 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms