RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 ERFEQ4G0M1 354 aa16.6■□□□□ 0.25
VPS33B-208ENST00000574755 BICDL1Q6ZP65 573 aa16.6■□□□□ 0.25
VPS33B-208ENST00000574755 CDC5LQ99459 802 aaKnown RBP16.6■□□□□ 0.25
VPS33B-208ENST00000574755 RTN4Q9NQC3 1192 aaKnown RBP16.6■□□□□ 0.25
VPS33B-208ENST00000574755 SCN7AQ01118 1682 aa16.6■□□□□ 0.25
VPS33B-208ENST00000574755 ZNF532Q9HCE3 1301 aa16.6■□□□□ 0.25
VPS33B-208ENST00000574755 PFKFB2O60825 505 aa16.6■□□□□ 0.25
VPS33B-208ENST00000574755 RASGRF1Q13972 1273 aa16.6■□□□□ 0.25
VPS33B-208ENST00000574755 FAM182BQ5T319 152 aa16.6■□□□□ 0.25
VPS33B-208ENST00000574755 SMIM5Q71RC9 77 aa16.6■□□□□ 0.25
VPS33B-208ENST00000574755 NAP1L2Q9ULW6 460 aaPredicted RBP16.6■□□□□ 0.25
VPS33B-208ENST00000574755 CASZ1Q86V15 1759 aa16.6■□□□□ 0.25
VPS33B-208ENST00000574755 THSD7AQ9UPZ6 1657 aa16.59■□□□□ 0.25
VPS33B-208ENST00000574755 ZNF213O14771 459 aa16.59■□□□□ 0.25
VPS33B-208ENST00000574755 PDE6AP16499 860 aa16.59■□□□□ 0.25
VPS33B-208ENST00000574755 GTF2E1P29083 439 aaPredicted RBP16.59■□□□□ 0.25
VPS33B-208ENST00000574755 UBE2HP62256 183 aa16.59■□□□□ 0.25
VPS33B-208ENST00000574755 CHRNDQ07001 517 aa16.59■□□□□ 0.25
VPS33B-208ENST00000574755 TPRNQ4KMQ1 711 aa16.59■□□□□ 0.25
VPS33B-208ENST00000574755 LRSAM1Q6UWE0 723 aa16.59■□□□□ 0.25
VPS33B-208ENST00000574755 WWC3Q9ULE0 1092 aa16.59■□□□□ 0.25
VPS33B-208ENST00000574755 NHSQ6T4R5 1651 aa16.59■□□□□ 0.25
VPS33B-208ENST00000574755 DOCK2Q92608 1830 aa16.58■□□□□ 0.25
VPS33B-208ENST00000574755 APPP05067 770 aa16.58■□□□□ 0.25
VPS33B-208ENST00000574755 FAM184AQ8NB25 1140 aa16.58■□□□□ 0.25
VPS33B-208ENST00000574755 DDX11Q96FC9 970 aa16.58■□□□□ 0.25
VPS33B-208ENST00000574755 LLPHQ9BRT6 129 aaKnown RBP16.58■□□□□ 0.25
VPS33B-208ENST00000574755 COL4A1P02462 1669 aa16.58■□□□□ 0.24
VPS33B-208ENST00000574755 CCT2P78371 535 aaKnown RBP16.58■□□□□ 0.24
VPS33B-208ENST00000574755 KRT85P78386 507 aa16.58■□□□□ 0.24
VPS33B-208ENST00000574755 MAP3K12Q12852 859 aa16.58■□□□□ 0.24
VPS33B-208ENST00000574755 TBC1D9BQ66K14 1250 aa16.58■□□□□ 0.24
VPS33B-208ENST00000574755 TAF1P21675 1872 aa16.57■□□□□ 0.24
VPS33B-208ENST00000574755 TCRBV5S4A2TA0A5A2 114 aa16.57■□□□□ 0.24
VPS33B-208ENST00000574755 GNPATO15228 680 aa16.57■□□□□ 0.24
VPS33B-208ENST00000574755 BCAMP50895 628 aa16.57■□□□□ 0.24
VPS33B-208ENST00000574755 RC3H1Q5TC82 1133 aaKnown RBP16.57■□□□□ 0.24
VPS33B-208ENST00000574755 RALYLQ86SE5 291 aaKnown RBP16.57■□□□□ 0.24
VPS33B-208ENST00000574755 ANKRD18AQ8IVF6 992 aa16.57■□□□□ 0.24
VPS33B-208ENST00000574755 NCOA7Q8NI08 942 aa16.57■□□□□ 0.24
VPS33B-208ENST00000574755 AIDAQ96BJ3 306 aa16.57■□□□□ 0.24
VPS33B-208ENST00000574755 CCNL1Q9UK58 526 aaPredicted RBP16.57■□□□□ 0.24
VPS33B-208ENST00000574755 RPS6KA4O75676 772 aa16.57■□□□□ 0.24
VPS33B-208ENST00000574755 PHF14O94880 888 aa16.57■□□□□ 0.24
VPS33B-208ENST00000574755 MCM5P33992 734 aa16.57■□□□□ 0.24
VPS33B-208ENST00000574755 MEX3CQ5U5Q3 659 aaKnown RBP16.57■□□□□ 0.24
VPS33B-208ENST00000574755 C3orf67Q6ZVT6 689 aa16.57■□□□□ 0.24
VPS33B-208ENST00000574755 SMARCC2Q8TAQ2 1214 aa16.57■□□□□ 0.24
VPS33B-208ENST00000574755 ANP32BQ92688 251 aaKnown RBP16.57■□□□□ 0.24
VPS33B-208ENST00000574755 ZNF274Q96GC6 653 aaPredicted RBP16.57■□□□□ 0.24
VPS33B-208ENST00000574755 H3BQV1 296 aa16.56■□□□□ 0.24
VPS33B-208ENST00000574755 SF3B3Q15393 1217 aaKnown RBP16.56■□□□□ 0.24
VPS33B-208ENST00000574755 IFFO2Q5TF58 517 aa16.56■□□□□ 0.24
VPS33B-208ENST00000574755 FAM173BQ6P4H8 233 aa16.56■□□□□ 0.24
VPS33B-208ENST00000574755 FBXL16Q8N461 479 aa16.56■□□□□ 0.24
VPS33B-208ENST00000574755 MAGEB6Q8N7X4 407 aa16.56■□□□□ 0.24
VPS33B-208ENST00000574755 NSUN7Q8NE18 718 aaKnown RBP16.56■□□□□ 0.24
VPS33B-208ENST00000574755 RBSNQ9H1K0 784 aa16.56■□□□□ 0.24
VPS33B-208ENST00000574755 BCL2L12Q9HB09 334 aa16.56■□□□□ 0.24
VPS33B-208ENST00000574755 NARFQ9UHQ1 456 aa16.56■□□□□ 0.24
VPS33B-208ENST00000574755 RGL2O15211 777 aa16.56■□□□□ 0.24
VPS33B-208ENST00000574755 PRC1O43663 620 aa16.56■□□□□ 0.24
VPS33B-208ENST00000574755 ZPR1O75312 459 aa16.56■□□□□ 0.24
VPS33B-208ENST00000574755 PDIA3P30101 505 aaKnown RBP16.56■□□□□ 0.24
VPS33B-208ENST00000574755 NCOA5Q9HCD5 579 aaKnown RBP16.56■□□□□ 0.24
VPS33B-208ENST00000574755 SRP68Q9UHB9 627 aaKnown RBP16.56■□□□□ 0.24
VPS33B-208ENST00000574755 PTPDC1A2A3K4 754 aa16.55■□□□□ 0.24
VPS33B-208ENST00000574755 HMGN5P82970 282 aaKnown RBP16.55■□□□□ 0.24
VPS33B-208ENST00000574755 TRDNQ13061 729 aa16.55■□□□□ 0.24
VPS33B-208ENST00000574755 MB21D2Q8IYB1 491 aaPredicted RBP16.55■□□□□ 0.24
VPS33B-208ENST00000574755 SETDB2Q96T68 719 aa16.55■□□□□ 0.24
VPS33B-208ENST00000574755 A0A1B0GUL6 1792 aa16.55■□□□□ 0.24
VPS33B-208ENST00000574755 CTDNEP1O95476 244 aa16.55■□□□□ 0.24
VPS33B-208ENST00000574755 STRBPQ96SI9 672 aaKnown RBP16.55■□□□□ 0.24
VPS33B-208ENST00000574755 NYXQ9GZU5 481 aa16.55■□□□□ 0.24
VPS33B-208ENST00000574755 RTCBQ9Y3I0 505 aaKnown RBP16.55■□□□□ 0.24
VPS33B-208ENST00000574755 KIF3AQ9Y496 699 aa16.55■□□□□ 0.24
VPS33B-208ENST00000574755 CHMP4CQ96CF2 233 aa16.54■□□□□ 0.24
VPS33B-208ENST00000574755 GJD4Q96KN9 370 aaPredicted RBP16.54■□□□□ 0.24
VPS33B-208ENST00000574755 GPHNQ9NQX3 736 aaPredicted RBP16.54■□□□□ 0.24
VPS33B-208ENST00000574755 BSDC1Q9NW68 430 aaPredicted RBP16.54■□□□□ 0.24
VPS33B-208ENST00000574755 CCDC183Q5T5S1 534 aa16.53■□□□□ 0.24
VPS33B-208ENST00000574755 MBD4O95243 580 aa16.53■□□□□ 0.24
VPS33B-208ENST00000574755 EVCP57679 992 aa16.53■□□□□ 0.24
VPS33B-208ENST00000574755 TTC6Q86TZ1 520 aa16.53■□□□□ 0.24
VPS33B-208ENST00000574755 NBPF5PQ86XG9 351 aaPredicted RBP16.53■□□□□ 0.24
VPS33B-208ENST00000574755 NBPF3Q9H094 633 aa16.53■□□□□ 0.24
VPS33B-208ENST00000574755 TAF1LQ8IZX4 1826 aa16.53■□□□□ 0.24
VPS33B-208ENST00000574755 ANTXR2P58335 489 aa16.52■□□□□ 0.24
VPS33B-208ENST00000574755 SLC10A5Q5PT55 438 aa16.52■□□□□ 0.24
VPS33B-208ENST00000574755 SCAND2PQ9GZW5 306 aaPredicted RBP16.52■□□□□ 0.24
VPS33B-208ENST00000574755 LRP2BPQ9P2M1 347 aa16.52■□□□□ 0.24
VPS33B-208ENST00000574755 IQSEC3Q9UPP2 1182 aaPredicted RBP16.52■□□□□ 0.24
VPS33B-208ENST00000574755 LY75O60449 1722 aa16.52■□□□□ 0.24
VPS33B-208ENST00000574755 KLF18A0A0U1RQI7 1052 aa16.52■□□□□ 0.23
VPS33B-208ENST00000574755 CCDC173Q0VFZ6 552 aa16.52■□□□□ 0.23
VPS33B-208ENST00000574755 COL24A1Q17RW2 1714 aa16.52■□□□□ 0.23
VPS33B-208ENST00000574755 TBC1D10CQ8IV04 446 aa16.52■□□□□ 0.23
VPS33B-208ENST00000574755 FAM43AQ8N2R8 423 aa16.52■□□□□ 0.23
VPS33B-208ENST00000574755 TSPY26PQ9H489 355 aa16.52■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms