RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 NYXQ9GZU5 481 aa7.84□□□□□ -1.15
VPS53-208ENST00000570650 VPS33BQ9H267 617 aa7.84□□□□□ -1.15
VPS53-208ENST00000570650 CEMIPQ8WUJ3 1361 aa7.84□□□□□ -1.16
VPS53-208ENST00000570650 ABCC12Q96J65 1359 aa7.84□□□□□ -1.16
VPS53-208ENST00000570650 KIF7Q2M1P5 1343 aa7.83□□□□□ -1.16
VPS53-208ENST00000570650 CDHR2Q9BYE9 1310 aa7.83□□□□□ -1.16
VPS53-208ENST00000570650 PRAMEF22A3QJZ6 481 aa7.83□□□□□ -1.16
VPS53-208ENST00000570650 RGS20O76081 388 aa7.83□□□□□ -1.16
VPS53-208ENST00000570650 HOXA10P31260 410 aaPredicted RBP7.83□□□□□ -1.16
VPS53-208ENST00000570650 GMPSP49915 693 aaPredicted RBP7.83□□□□□ -1.16
VPS53-208ENST00000570650 CXCL9Q07325 125 aa7.83□□□□□ -1.16
VPS53-208ENST00000570650 HLFQ16534 295 aa7.83□□□□□ -1.16
VPS53-208ENST00000570650 AOC3Q16853 763 aa7.83□□□□□ -1.16
VPS53-208ENST00000570650 CTU1Q7Z7A3 348 aaKnown RBP7.83□□□□□ -1.16
VPS53-208ENST00000570650 GCC1Q96CN9 775 aa7.83□□□□□ -1.16
VPS53-208ENST00000570650 CRAMP1Q96RY5 1269 aa7.83□□□□□ -1.16
VPS53-208ENST00000570650 TMX4Q9H1E5 349 aaPredicted RBP7.83□□□□□ -1.16
VPS53-208ENST00000570650 RIC1Q4ADV7 1423 aa7.83□□□□□ -1.16
VPS53-208ENST00000570650 TNRC18O15417 2968 aaPredicted RBP7.83□□□□□ -1.16
VPS53-208ENST00000570650 FAM155AB1AL88 458 aaPredicted RBP7.82□□□□□ -1.16
VPS53-208ENST00000570650 KIF23Q02241 960 aaPredicted RBP7.82□□□□□ -1.16
VPS53-208ENST00000570650 RGMBQ6NW40 437 aa7.82□□□□□ -1.16
VPS53-208ENST00000570650 NBPF10Q6P3W6 841 aaKnown RBP7.82□□□□□ -1.16
VPS53-208ENST00000570650 RSBN1LQ6PCB5 846 aaPredicted RBP7.82□□□□□ -1.16
VPS53-208ENST00000570650 NBPF15Q8N660 670 aa7.82□□□□□ -1.16
VPS53-208ENST00000570650 RBM17Q96I25 401 aaKnown RBP7.82□□□□□ -1.16
VPS53-208ENST00000570650 BCL2L13Q9BXK5 485 aa7.82□□□□□ -1.16
VPS53-208ENST00000570650 FAM117AQ9C073 453 aa7.82□□□□□ -1.16
VPS53-208ENST00000570650 RNF186Q9NXI6 227 aa7.82□□□□□ -1.16
VPS53-208ENST00000570650 ZNRF3Q9ULT6 936 aa7.82□□□□□ -1.16
VPS53-208ENST00000570650 H7C1D1 291 aa7.81□□□□□ -1.16
VPS53-208ENST00000570650 TCERG1O14776 1098 aaKnown RBP7.81□□□□□ -1.16
VPS53-208ENST00000570650 TRPA1O75762 1119 aa7.81□□□□□ -1.16
VPS53-208ENST00000570650 HIRAP54198 1017 aaPredicted RBP7.81□□□□□ -1.16
VPS53-208ENST00000570650 TNIP1Q15025 636 aa7.81□□□□□ -1.16
VPS53-208ENST00000570650 MSS51Q4VC12 460 aa7.81□□□□□ -1.16
VPS53-208ENST00000570650 MYSM1Q5VVJ2 828 aa7.81□□□□□ -1.16
VPS53-208ENST00000570650 USP48Q86UV5 1035 aa7.81□□□□□ -1.16
VPS53-208ENST00000570650 SUPT20HQ8NEM7 779 aa7.81□□□□□ -1.16
VPS53-208ENST00000570650 TRPM4Q8TD43 1214 aa7.81□□□□□ -1.16
VPS53-208ENST00000570650 EMID1Q96A84 441 aaPredicted RBP7.81□□□□□ -1.16
VPS53-208ENST00000570650 USB1Q9BQ65 265 aaKnown RBP7.81□□□□□ -1.16
VPS53-208ENST00000570650 GBA2Q9HCG7 927 aaPredicted RBP7.81□□□□□ -1.16
VPS53-208ENST00000570650 PCDHB15Q9Y5E8 787 aa7.81□□□□□ -1.16
VPS53-208ENST00000570650 IBTKQ9P2D0 1353 aaPredicted RBP7.81□□□□□ -1.16
VPS53-208ENST00000570650 ERVV-1B6SEH8 477 aa7.8□□□□□ -1.16
VPS53-208ENST00000570650 U2SURPO15042 1029 aaKnown RBP7.8□□□□□ -1.16
VPS53-208ENST00000570650 SPTLC1O15269 473 aa7.8□□□□□ -1.16
VPS53-208ENST00000570650 ZNF157P51786 506 aaPredicted RBP7.8□□□□□ -1.16
VPS53-208ENST00000570650 EIF4G2P78344 907 aaKnown RBP eCLIP7.8□□□□□ -1.16
VPS53-208ENST00000570650 NEUROD2Q15784 382 aa7.8□□□□□ -1.16
VPS53-208ENST00000570650 PKN2Q16513 984 aaKnown RBP7.8□□□□□ -1.16
VPS53-208ENST00000570650 PLA2G2CQ5R387 149 aa7.8□□□□□ -1.16
VPS53-208ENST00000570650 SLC51AQ86UW1 340 aa7.8□□□□□ -1.16
VPS53-208ENST00000570650 C2orf69Q8N8R5 385 aa7.8□□□□□ -1.16
VPS53-208ENST00000570650 ANKLE1Q8NAG6 615 aa7.8□□□□□ -1.16
VPS53-208ENST00000570650 RTFDC1Q9BY42 306 aaPredicted RBP7.8□□□□□ -1.16
VPS53-208ENST00000570650 PRKD2Q9BZL6 878 aa7.8□□□□□ -1.16
VPS53-208ENST00000570650 CNOT7Q9UIV1 285 aaKnown RBP7.8□□□□□ -1.16
VPS53-208ENST00000570650 TIMELESSQ9UNS1 1208 aa7.8□□□□□ -1.16
VPS53-208ENST00000570650 ATP6V0A2Q9Y487 856 aa7.8□□□□□ -1.16
VPS53-208ENST00000570650 AKAP11Q9UKA4 1901 aa7.8□□□□□ -1.16
VPS53-208ENST00000570650 C6orf229H3BNL8 230 aa7.79□□□□□ -1.16
VPS53-208ENST00000570650 RAD17O75943 681 aa7.79□□□□□ -1.16
VPS53-208ENST00000570650 HSPA5P11021 654 aaKnown RBP7.79□□□□□ -1.16
VPS53-208ENST00000570650 KIAA2012Q0VF49 1180 aa7.79□□□□□ -1.16
VPS53-208ENST00000570650 DIXDC1Q155Q3 683 aa7.79□□□□□ -1.16
VPS53-208ENST00000570650 KRT26Q7Z3Y9 468 aa7.79□□□□□ -1.16
VPS53-208ENST00000570650 RIC3Q7Z5B4 369 aa7.79□□□□□ -1.16
VPS53-208ENST00000570650 LIMD1Q9UGP4 676 aa7.79□□□□□ -1.16
VPS53-208ENST00000570650 MAP3K15Q6ZN16 1313 aa7.78□□□□□ -1.16
VPS53-208ENST00000570650 UBN2Q6ZU65 1347 aa7.78□□□□□ -1.16
VPS53-208ENST00000570650 SHTN1A0MZ66 631 aa7.78□□□□□ -1.16
VPS53-208ENST00000570650 GPTP24298 496 aa7.78□□□□□ -1.16
VPS53-208ENST00000570650 HABP4Q5JVS0 413 aaKnown RBP7.78□□□□□ -1.16
VPS53-208ENST00000570650 SUSD4Q5VX71 490 aa7.78□□□□□ -1.16
VPS53-208ENST00000570650 DLK2Q6UY11 383 aa7.78□□□□□ -1.16
VPS53-208ENST00000570650 DPP8Q6V1X1 898 aaPredicted RBP7.78□□□□□ -1.16
VPS53-208ENST00000570650 KIF6Q6ZMV9 814 aa7.78□□□□□ -1.16
VPS53-208ENST00000570650 MPNDQ8N594 471 aa7.78□□□□□ -1.16
VPS53-208ENST00000570650 NGEFQ8N5V2 710 aa7.78□□□□□ -1.16
VPS53-208ENST00000570650 RTF1Q92541 710 aaKnown RBP7.78□□□□□ -1.16
VPS53-208ENST00000570650 DPF2Q92785 391 aa7.78□□□□□ -1.16
VPS53-208ENST00000570650 NLRP3Q96P20 1036 aa7.78□□□□□ -1.16
VPS53-208ENST00000570650 CSRNP1Q96S65 589 aa7.78□□□□□ -1.16
VPS53-208ENST00000570650 HDAC9Q9UKV0 1011 aa7.78□□□□□ -1.16
VPS53-208ENST00000570650 FCF1Q9Y324 198 aaKnown RBP7.78□□□□□ -1.16
VPS53-208ENST00000570650 COL3A1P02461 1466 aaPredicted RBP7.78□□□□□ -1.16
VPS53-208ENST00000570650 YDJCA8MPS7 323 aa7.77□□□□□ -1.17
VPS53-208ENST00000570650 DXOO77932 396 aaKnown RBP7.77□□□□□ -1.17
VPS53-208ENST00000570650 NTSR2O95665 410 aa7.77□□□□□ -1.17
VPS53-208ENST00000570650 PRKAR2BP31323 418 aa7.77□□□□□ -1.17
VPS53-208ENST00000570650 GJA5P36382 358 aa7.77□□□□□ -1.17
VPS53-208ENST00000570650 MMP16P51512 607 aa7.77□□□□□ -1.17
VPS53-208ENST00000570650 CSPP1Q1MSJ5 1256 aa7.77□□□□□ -1.17
VPS53-208ENST00000570650 TTLL7Q6ZT98 887 aa7.77□□□□□ -1.17
VPS53-208ENST00000570650 PPP1R42Q7Z4L9 355 aa7.77□□□□□ -1.17
VPS53-208ENST00000570650 RETREG3Q86VR2 466 aa7.77□□□□□ -1.17
VPS53-208ENST00000570650 SP8Q8IXZ3 490 aa7.77□□□□□ -1.17
VPS53-208ENST00000570650 DCPSQ96C86 337 aaKnown RBP7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms