RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 MMP14P50281 582 aa16.25■□□□□ 0.19
CNOT1-220ENST00000569916 ANGEL2Q5VTE6 544 aaKnown RBP16.25■□□□□ 0.19
CNOT1-220ENST00000569916 FBXO33Q7Z6M2 555 aa16.25■□□□□ 0.19
CNOT1-220ENST00000569916 FTSJ3Q8IY81 847 aaKnown RBP16.25■□□□□ 0.19
CNOT1-220ENST00000569916 DZIP1LQ8IYY4 767 aaKnown RBP16.25■□□□□ 0.19
CNOT1-220ENST00000569916 OGFOD1Q8N543 542 aa16.25■□□□□ 0.19
CNOT1-220ENST00000569916 COPRSQ9NQ92 184 aa16.25■□□□□ 0.19
CNOT1-220ENST00000569916 ABT1Q9ULW3 272 aaKnown RBP16.25■□□□□ 0.19
CNOT1-220ENST00000569916 PITPNM2Q9BZ72 1349 aa16.24■□□□□ 0.19
CNOT1-220ENST00000569916 WNT10BO00744 389 aa16.24■□□□□ 0.19
CNOT1-220ENST00000569916 SRGAP3O43295 1099 aa16.24■□□□□ 0.19
CNOT1-220ENST00000569916 NBPF9Q3BBW0 867 aa16.24■□□□□ 0.19
CNOT1-220ENST00000569916 ZNF408Q9H9D4 720 aa16.24■□□□□ 0.19
CNOT1-220ENST00000569916 HDAC9Q9UKV0 1011 aa16.24■□□□□ 0.19
CNOT1-220ENST00000569916 TLL2Q9Y6L7 1015 aa16.24■□□□□ 0.19
CNOT1-220ENST00000569916 DEFB115Q30KQ5 88 aa16.23■□□□□ 0.19
CNOT1-220ENST00000569916 CAVIN4Q5BKX8 364 aa16.23■□□□□ 0.19
CNOT1-220ENST00000569916 SULF1Q8IWU6 871 aa16.23■□□□□ 0.19
CNOT1-220ENST00000569916 ZBED3Q96IU2 234 aaPredicted RBP16.23■□□□□ 0.19
CNOT1-220ENST00000569916 IFIT1P09914 478 aaKnown RBP16.22■□□□□ 0.19
CNOT1-220ENST00000569916 SLC5A1P13866 664 aa16.22■□□□□ 0.19
CNOT1-220ENST00000569916 IL15P40933 162 aaPredicted RBP16.22■□□□□ 0.19
CNOT1-220ENST00000569916 VEGFBP49765 207 aa16.22■□□□□ 0.19
CNOT1-220ENST00000569916 VPS37DQ86XT2 251 aa16.22■□□□□ 0.19
CNOT1-220ENST00000569916 ITPRIPQ8IWB1 547 aa16.22■□□□□ 0.19
CNOT1-220ENST00000569916 LPIN2Q92539 896 aa16.22■□□□□ 0.19
CNOT1-220ENST00000569916 CEP126Q9P2H0 1117 aa16.22■□□□□ 0.19
CNOT1-220ENST00000569916 IQSEC3Q9UPP2 1182 aaPredicted RBP16.22■□□□□ 0.19
CNOT1-220ENST00000569916 PAPPA2Q9BXP8 1791 aa16.21■□□□□ 0.19
CNOT1-220ENST00000569916 PNMA6EA0A0J9YXQ4 647 aa16.21■□□□□ 0.19
CNOT1-220ENST00000569916 F8W031 263 aaPredicted RBP16.21■□□□□ 0.19
CNOT1-220ENST00000569916 BCAMP50895 628 aa16.21■□□□□ 0.19
CNOT1-220ENST00000569916 ATP2B3Q16720 1220 aa16.21■□□□□ 0.19
CNOT1-220ENST00000569916 MFSD14BQ5SR56 506 aa16.21■□□□□ 0.19
CNOT1-220ENST00000569916 SAPCD2Q86UD0 394 aa16.21■□□□□ 0.19
CNOT1-220ENST00000569916 COL1A1P02452 1464 aaPredicted RBP16.21■□□□□ 0.19
CNOT1-220ENST00000569916 MTMR14Q8NCE2 650 aa16.2■□□□□ 0.18
CNOT1-220ENST00000569916 PANK1Q8TE04 598 aa16.2■□□□□ 0.18
CNOT1-220ENST00000569916 CDCA5Q96FF9 252 aa16.2■□□□□ 0.18
CNOT1-220ENST00000569916 SCAF8Q9UPN6 1271 aaKnown RBP16.2■□□□□ 0.18
CNOT1-220ENST00000569916 ZBTB7BO15156 539 aaPredicted RBP16.19■□□□□ 0.18
CNOT1-220ENST00000569916 CHAF1AQ13111 956 aaPredicted RBP16.19■□□□□ 0.18
CNOT1-220ENST00000569916 C1orf115Q9H7X2 142 aa16.19■□□□□ 0.18
CNOT1-220ENST00000569916 RCAN3Q9UKA8 241 aa16.19■□□□□ 0.18
CNOT1-220ENST00000569916 PCDHAC2Q9Y5I4 1007 aa16.19■□□□□ 0.18
CNOT1-220ENST00000569916 WDR33Q9C0J8 1336 aaKnown RBP16.19■□□□□ 0.18
CNOT1-220ENST00000569916 PCNTO95613 3336 aa16.18■□□□□ 0.18
CNOT1-220ENST00000569916 FRAT2O75474 233 aaPredicted RBP16.18■□□□□ 0.18
CNOT1-220ENST00000569916 DLGAP5Q15398 846 aa16.18■□□□□ 0.18
CNOT1-220ENST00000569916 GRIK5Q16478 980 aa16.18■□□□□ 0.18
CNOT1-220ENST00000569916 CFAP100Q494V2 611 aa16.18■□□□□ 0.18
CNOT1-220ENST00000569916 CYP4F22Q6NT55 531 aa16.18■□□□□ 0.18
CNOT1-220ENST00000569916 HHIPL1Q96JK4 782 aa16.18■□□□□ 0.18
CNOT1-220ENST00000569916 GBA2Q9HCG7 927 aaPredicted RBP16.18■□□□□ 0.18
CNOT1-220ENST00000569916 SPDYE2BA6NHP3 402 aa16.17■□□□□ 0.18
CNOT1-220ENST00000569916 SPDYE6P0CI01 402 aa16.17■□□□□ 0.18
CNOT1-220ENST00000569916 HSPA1AP0DMV8 641 aaKnown RBP16.17■□□□□ 0.18
CNOT1-220ENST00000569916 HSPA1BP0DMV9 641 aaKnown RBP16.17■□□□□ 0.18
CNOT1-220ENST00000569916 POLA2Q14181 598 aa16.17■□□□□ 0.18
CNOT1-220ENST00000569916 PAXIP1Q6ZW49 1069 aaPredicted RBP16.17■□□□□ 0.18
CNOT1-220ENST00000569916 TBC1D22AQ8WUA7 517 aa16.17■□□□□ 0.18
CNOT1-220ENST00000569916 CAPNS2Q96L46 248 aa16.17■□□□□ 0.18
CNOT1-220ENST00000569916 TTF2Q9UNY4 1162 aaKnown RBP16.17■□□□□ 0.18
CNOT1-220ENST00000569916 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.17■□□□□ 0.18
CNOT1-220ENST00000569916 AOX1Q06278 1338 aa16.17■□□□□ 0.18
CNOT1-220ENST00000569916 ADORA1P30542 326 aa16.16■□□□□ 0.18
CNOT1-220ENST00000569916 ECE1P42892 770 aa16.16■□□□□ 0.18
CNOT1-220ENST00000569916 ATP8B2P98198 1209 aa16.16■□□□□ 0.18
CNOT1-220ENST00000569916 TFCP2Q12800 502 aa16.16■□□□□ 0.18
CNOT1-220ENST00000569916 APOBEC3FQ8IUX4 373 aaKnown RBP16.16■□□□□ 0.18
CNOT1-220ENST00000569916 C2orf69Q8N8R5 385 aa16.16■□□□□ 0.18
CNOT1-220ENST00000569916 SSH3Q8TE77 659 aa16.16■□□□□ 0.18
CNOT1-220ENST00000569916 PRMT6Q96LA8 375 aaPredicted RBP16.16■□□□□ 0.18
CNOT1-220ENST00000569916 SERPINA10Q9UK55 444 aa16.16■□□□□ 0.18
CNOT1-220ENST00000569916 MS4A1P11836 297 aa16.15■□□□□ 0.18
CNOT1-220ENST00000569916 PHKA1P46020 1223 aa16.15■□□□□ 0.18
CNOT1-220ENST00000569916 HUNKP57058 714 aa16.15■□□□□ 0.18
CNOT1-220ENST00000569916 PRAMEF18Q5VWM3 479 aa16.15■□□□□ 0.18
CNOT1-220ENST00000569916 A0A1B0GUL7 405 aa16.14■□□□□ 0.17
CNOT1-220ENST00000569916 ZBTB22O15209 634 aa16.14■□□□□ 0.17
CNOT1-220ENST00000569916 MYO1BO43795 1136 aa16.14■□□□□ 0.17
CNOT1-220ENST00000569916 RBM5P52756 815 aaKnown RBP eCLIP16.14■□□□□ 0.17
CNOT1-220ENST00000569916 TIMM10P62072 90 aa16.14■□□□□ 0.17
CNOT1-220ENST00000569916 GRM1Q13255 1194 aa16.14■□□□□ 0.17
CNOT1-220ENST00000569916 MVPQ14764 893 aaKnown RBP16.14■□□□□ 0.17
CNOT1-220ENST00000569916 AKAP2Q9Y2D5 859 aa16.14■□□□□ 0.17
CNOT1-220ENST00000569916 SSC5DA1L4H1 1573 aa16.13■□□□□ 0.17
CNOT1-220ENST00000569916 CLRN2A0PK11 232 aa16.13■□□□□ 0.17
CNOT1-220ENST00000569916 CRKP46108 304 aa16.13■□□□□ 0.17
CNOT1-220ENST00000569916 G3BP1Q13283 466 aaKnown RBP eCLIP16.13■□□□□ 0.17
CNOT1-220ENST00000569916 CCDC102BQ68D86 513 aa16.13■□□□□ 0.17
CNOT1-220ENST00000569916 CEP85Q6P2H3 762 aa16.13■□□□□ 0.17
CNOT1-220ENST00000569916 WDR66Q8TBY9 1149 aa16.13■□□□□ 0.17
CNOT1-220ENST00000569916 GNL3LQ9NVN8 582 aaKnown RBP16.13■□□□□ 0.17
CNOT1-220ENST00000569916 SUGT1Q9Y2Z0 365 aa16.13■□□□□ 0.17
CNOT1-220ENST00000569916 SEMA3EO15041 775 aa16.12■□□□□ 0.17
CNOT1-220ENST00000569916 AOC2O75106 756 aa16.12■□□□□ 0.17
CNOT1-220ENST00000569916 FKBP1BP68106 108 aa16.12■□□□□ 0.17
CNOT1-220ENST00000569916 HDLBPQ00341 1268 aaKnown RBP16.12■□□□□ 0.17
CNOT1-220ENST00000569916 SPDYE2Q495Y8 402 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms